comparison emboss_5/emboss_format_corrector.py @ 7:55075056bd56

Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.

6:5edd293af092

#EMBOSS format corrector

import operator
#from galaxy import datatypes

#Properly set file formats after job run
def exec_after_process( app, inp_data, out_data, param_dict,tool, stdout, stderr):
#Properly set file formats before job run
#def exec_before_job(trans, inp_data, out_data, param_dict,tool):
    #why isn't items an ordered list?
    items = out_data.items()
    #lets sort it ourselves....
    items = sorted(items, key=operator.itemgetter(0))
    #items is now sorted...

7:55075056bd56

#EMBOSS format corrector

import operator

#Properly set file formats before job run
def exec_before_job( app, inp_data=None, out_data=None, tool=None, param_dict=None ):
    #why isn't items an ordered list?
    items = out_data.items()
    #lets sort it ourselves....
    items = sorted(items, key=operator.itemgetter(0))
    #items is now sorted...