Mercurial > repos > devteam > emboss_5
comparison emboss_noreturn.xml @ 11:0e2484b6829b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
author | iuc |
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date | Mon, 30 Jan 2017 13:27:40 -0500 |
parents | 9b98d3d903c6 |
children | 27c43fb015f0 |
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10:9b98d3d903c6 | 11:0e2484b6829b |
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1 <tool id="EMBOSS: noreturn60" name="noreturn" version="5.0.0"> | 1 <tool id="EMBOSS: noreturn60" name="noreturn" version="5.0.0"> |
2 <description>Removes carriage return from ASCII files</description> | 2 <description>Removes carriage return from ASCII files</description> |
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | 3 <macros> |
4 <command>noreturn -infile $input1 -outfile $out_file1 -system $system -auto</command> | 4 <import>macros.xml</import> |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command>noreturn -infile '$input1' -outfile '$out_file1' -system $system -auto</command> | |
5 <inputs> | 8 <inputs> |
6 <param format="data" name="input1" type="data"> | 9 <param name="input1" type="data" format="data" label="On query" /> |
7 <label>On query</label> | 10 <param name="system" type="select" label="Target operating system for end-of-line format"> |
8 </param> | |
9 <param name="system" type="select"> | |
10 <label>Target operating system for end-of-line format</label> | |
11 <option value="unix">Unix/Linux systems</option> | 11 <option value="unix">Unix/Linux systems</option> |
12 <option value="pc">Windows/DOS</option> | 12 <option value="pc">Windows/DOS</option> |
13 <option value="mac">Apple Macintosh</option> | 13 <option value="mac">Apple Macintosh</option> |
14 </param> | 14 </param> |
15 </inputs> | 15 </inputs> |
16 <outputs> | 16 <outputs> |
17 <data format="noreturn" name="out_file1" /> | 17 <data name="out_file1" format="noreturn" /> |
18 </outputs> | 18 </outputs> |
19 <tests> | 19 <tests> |
20 <test> | 20 <test> |
21 <param name="input1" value="2.fasta"/> | 21 <param name="input1" value="2.fasta"/> |
22 <param name="system" value="unix"/> | 22 <param name="system" value="unix"/> |
23 <output name="out_file1" file="emboss_noreturn_out.noreturn"/> | 23 <output name="out_file1" file="emboss_noreturn_out.noreturn"/> |
24 </test> | 24 </test> |
25 </tests> | 25 </tests> |
26 <help> | 26 <help> |
27 You can view the original documentation here_. | 27 You can view the original documentation here_. |
28 | |
29 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/noreturn.html | |
30 | 28 |
31 ------ | 29 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/noreturn.html |
32 | |
33 **Citation** | |
34 | |
35 For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_ | |
36 | |
37 If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_ | |
38 </help> | 30 </help> |
31 <expand macro="citations" /> | |
39 </tool> | 32 </tool> |