comparison emboss_hmoment.xml @ 11:0e2484b6829b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
author iuc
date Mon, 30 Jan 2017 13:27:40 -0500
parents 9b98d3d903c6
children 27c43fb015f0
comparison
equal deleted inserted replaced
10:9b98d3d903c6 11:0e2484b6829b
1 <tool id="EMBOSS: hmoment44" name="hmoment" version="5.0.0"> 1 <tool id="EMBOSS: hmoment44" name="hmoment" version="5.0.0.1">
2 <description>Hydrophobic moment calculation</description> 2 <description>Hydrophobic moment calculation</description>
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> 3 <macros>
4 <command>hmoment -seqall $input1 -outfile $out_file1 -window $window -aangle $aangle -graph png -auto</command> 4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <command>hmoment -seqall '$input1' -outfile '$out_file1' -window $window -aangle $aangle -graph png -auto</command>
5 <inputs> 8 <inputs>
6 <param format="data" name="input1" type="data"> 9 <param name="input1" type="data" format="data" label="Sequences" />
7 <label>Sequences</label> 10 <param name="window" type="integer" value="10" label="Window" />
8 </param> 11 <param name="aangle" type="integer" value="100" label="Alpha helix angle (degrees)" />
9 <param name="window" type="text" value="10">
10 <label>Window</label>
11 </param>
12 <param name="aangle" type="text" value="100">
13 <label>Alpha helix angle (degrees)</label>
14 </param>
15 </inputs> 12 </inputs>
16 <outputs> 13 <outputs>
17 <data format="hmoment" name="out_file1" /> 14 <data name="out_file1" format="hmoment" />
18 </outputs> 15 </outputs>
19 <tests> 16 <tests>
20 <test> 17 <test>
21 <param name="input1" value="2.fasta"/> 18 <param name="input1" value="2.fasta"/>
22 <param name="window" value="10"/> 19 <param name="window" value="10"/>
24 <output name="out_file1" file="emboss_hmoment_out.hmoment"/> 21 <output name="out_file1" file="emboss_hmoment_out.hmoment"/>
25 </test> 22 </test>
26 </tests> 23 </tests>
27 <help> 24 <help>
28 You can view the original documentation here_. 25 You can view the original documentation here_.
29
30 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/hmoment.html
31 26
32 ------ 27 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/hmoment.html
33
34 **Citation**
35
36 For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. &lt;http://www.ncbi.nlm.nih.gov/pubmed/10827456&gt;`_
37
38 If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
39 </help> 28 </help>
29 <expand macro="citations" />
40 </tool> 30 </tool>