Mercurial > repos > devteam > emboss_5

annotate emboss_backtranseq.xml @ 18:c2228166c035 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 4812c313fd8762b11f7fd002436e3a93b4c67f00"
author iuc
date Fri, 20 Nov 2020 16:49:40 +0000
parents 33381b9c268c
children 21a9fb508031
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33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
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1 <tool id="EMBOSS: backtranseq2" name="backtranseq" version="6.6.0">
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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2 <description>Back translate a protein sequence</description>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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3 <macros>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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4 <import>macros.xml</import>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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5 </macros>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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6 <requirements>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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7 <requirement type="package" version="6.6.0">emboss</requirement>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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8 </requirements>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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9 <code file="emboss_format_corrector.py" />
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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10 <command>backtranseq -sequence '$input1' -outfile '$out_file1' -cfile $cfile -osformat2 $out_format1 -auto</command>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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11 <inputs>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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12 <param name="input1" type="data" format="fasta" label="Protein sequence" help="In FASTA format" />
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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13 <param name="cfile" type="select" label="Codon usage file">
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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14 <option value="Ehum.cut">Ehum.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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15 <option value="Eacc.cut">Eacc.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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16 <option value="Eadenovirus5.cut">Eadenovirus5.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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17 <option value="Eadenovirus7.cut">Eadenovirus7.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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18 <option value="Eaidlav.cut">Eaidlav.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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19 <option value="Eanasp.cut">Eanasp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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20 <option value="Eani.cut">Eani.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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21 <option value="Eani_h.cut">Eani_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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22 <option value="Eanidmit.cut">Eanidmit.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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23 <option value="Easn.cut">Easn.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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24 <option value="Eath.cut">Eath.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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25 <option value="Eatu.cut">Eatu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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26 <option value="Eavi.cut">Eavi.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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27 <option value="Ebja.cut">Ebja.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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28 <option value="Ebly.cut">Ebly.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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29 <option value="Ebme.cut">Ebme.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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30 <option value="Ebmo.cut">Ebmo.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
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31 <option value="Ebna.cut">Ebna.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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32 <option value="Ebov.cut">Ebov.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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33 <option value="Ebovsp.cut">Ebovsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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34 <option value="Ebst.cut">Ebst.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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35 <option value="Ebsu.cut">Ebsu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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36 <option value="Ebsu_h.cut">Ebsu_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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37 <option value="Ecac.cut">Ecac.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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38 <option value="Ecal.cut">Ecal.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
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39 <option value="Eccr.cut">Eccr.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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40 <option value="Ecel.cut">Ecel.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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41 <option value="Echi.cut">Echi.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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42 <option value="Echicken.cut">Echicken.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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43 <option value="Echisp.cut">Echisp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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44 <option value="Echk.cut">Echk.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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45 <option value="Echmp.cut">Echmp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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46 <option value="Echnt.cut">Echnt.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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47 <option value="Echos.cut">Echos.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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48 <option value="Echzm.cut">Echzm.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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49 <option value="Echzmrubp.cut">Echzmrubp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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50 <option value="Ecpx.cut">Ecpx.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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51 <option value="Ecre.cut">Ecre.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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52 <option value="Ecrisp.cut">Ecrisp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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53 <option value="Ectr.cut">Ectr.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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54 <option value="Edayhoff.cut">Edayhoff.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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55 <option value="Eddi.cut">Eddi.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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56 <option value="Eddi_h.cut">Eddi_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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57 <option value="Edog.cut">Edog.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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58 <option value="Edro.cut">Edro.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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59 <option value="Edro_h.cut">Edro_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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60 <option value="Edrosophila.cut">Edrosophila.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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61 <option value="Eeca.cut">Eeca.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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62 <option value="Eeco.cut">Eeco.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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63 <option value="Eeco_h.cut">Eeco_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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64 <option value="Eecoli.cut">Eecoli.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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65 <option value="Ef1.cut">Ef1.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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66 <option value="Efish.cut">Efish.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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67 <option value="Efmdvpolyp.cut">Efmdvpolyp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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68 <option value="Eham.cut">Eham.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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69 <option value="Ehha.cut">Ehha.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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70 <option value="Ehin.cut">Ehin.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
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71 <option value="Ehma.cut">Ehma.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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72 <option value="Ehuman.cut">Ehuman.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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73 <option value="Ekla.cut">Ekla.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
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74 <option value="Ekpn.cut">Ekpn.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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75 <option value="Ella.cut">Ella.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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76 <option value="Emac.cut">Emac.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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77 <option value="Emaize.cut">Emaize.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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78 <option value="Emam_h.cut">Emam_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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79 <option value="Emixlg.cut">Emixlg.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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80 <option value="Emouse.cut">Emouse.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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81 <option value="Emsa.cut">Emsa.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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82 <option value="Emse.cut">Emse.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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83 <option value="Emta.cut">Emta.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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84 <option value="Emtu.cut">Emtu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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parents: 14
diff changeset
85 <option value="Emus.cut">Emus.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
86 <option value="Emussp.cut">Emussp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
87 <option value="Emva.cut">Emva.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
88 <option value="Emze.cut">Emze.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
89 <option value="Emzecp.cut">Emzecp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
90 <option value="Encr.cut">Encr.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
91 <option value="Eneu.cut">Eneu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
92 <option value="Engo.cut">Engo.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
93 <option value="Eoncsp.cut">Eoncsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
94 <option value="Epae.cut">Epae.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
95 <option value="Epea.cut">Epea.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
96 <option value="Epet.cut">Epet.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
97 <option value="Epfa.cut">Epfa.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
98 <option value="Ephix174.cut">Ephix174.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
99 <option value="Ephv.cut">Ephv.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
100 <option value="Ephy.cut">Ephy.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
101 <option value="Epig.cut">Epig.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
102 <option value="Epolyomaa2.cut">Epolyomaa2.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
103 <option value="Epombe.cut">Epombe.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
104 <option value="Epombecai.cut">Epombecai.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
105 <option value="Epot.cut">Epot.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
106 <option value="Eppu.cut">Eppu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
107 <option value="Epse.cut">Epse.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
108 <option value="Epsy.cut">Epsy.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
109 <option value="Epvu.cut">Epvu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
110 <option value="Erab.cut">Erab.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
111 <option value="Erabbit.cut">Erabbit.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
112 <option value="Erabsp.cut">Erabsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
113 <option value="Erat.cut">Erat.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
114 <option value="Eratsp.cut">Eratsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
115 <option value="Erca.cut">Erca.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
116 <option value="Erhm.cut">Erhm.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
117 <option value="Eric.cut">Eric.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
118 <option value="Erle.cut">Erle.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
119 <option value="Erme.cut">Erme.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
120 <option value="Ersp.cut">Ersp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
121 <option value="Esalsp.cut">Esalsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
122 <option value="Esau.cut">Esau.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
123 <option value="Esco.cut">Esco.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
124 <option value="Esgi.cut">Esgi.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
125 <option value="Eshp.cut">Eshp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
126 <option value="Eshpsp.cut">Eshpsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
127 <option value="Esli.cut">Esli.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
128 <option value="Eslm.cut">Eslm.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
129 <option value="Esma.cut">Esma.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
130 <option value="Esmi.cut">Esmi.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
131 <option value="Esmu.cut">Esmu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
132 <option value="Esoy.cut">Esoy.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
133 <option value="Espi.cut">Espi.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
134 <option value="Espn.cut">Espn.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
135 <option value="Espo.cut">Espo.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
136 <option value="Espo_h.cut">Espo_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
137 <option value="Espu.cut">Espu.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
138 <option value="Esta.cut">Esta.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
139 <option value="Esty.cut">Esty.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
140 <option value="Esus.cut">Esus.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
141 <option value="Esv40.cut">Esv40.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
142 <option value="Esyhsp.cut">Esyhsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
143 <option value="Esynsp.cut">Esynsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
144 <option value="Etbr.cut">Etbr.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
145 <option value="Etcr.cut">Etcr.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
146 <option value="Eter.cut">Eter.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
147 <option value="Etetsp.cut">Etetsp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
148 <option value="Etob.cut">Etob.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
149 <option value="Etobcp.cut">Etobcp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
150 <option value="Etom.cut">Etom.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
151 <option value="Etrb.cut">Etrb.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
152 <option value="Evco.cut">Evco.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
153 <option value="Ewht.cut">Ewht.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
154 <option value="Exel.cut">Exel.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
155 <option value="Exenopus.cut">Exenopus.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
156 <option value="Eyeast.cut">Eyeast.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
157 <option value="Eyeastcai.cut">Eyeastcai.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
158 <option value="Eyen.cut">Eyen.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
159 <option value="Eysc.cut">Eysc.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
160 <option value="Eysc_h.cut">Eysc_h.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
161 <option value="Eyscmt.cut">Eyscmt.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
162 <option value="Eysp.cut">Eysp.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
163 <option value="Ezebrafish.cut">Ezebrafish.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
164 <option value="Ezma.cut">Ezma.cut</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
165 </param>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
166 <param name="out_format1" type="select" label="Output sequence file format">
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
167 <option value="fasta">FASTA (m)</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
168 <option value="acedb">ACeDB (m)</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
169 <option value="asn1">ASN.1 (m)</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
170 <option value="clustal">Clustal (m)</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
iuc
parents: 14
diff changeset
171 <option value="codata">CODATA (m)</option>
33381b9c268c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
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172 <option value="embl">EMBL (m)</option>
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173 <option value="fitch">Fitch (m)</option>
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174 <option value="gcg">Wisconsin Package GCG 9.x and 10.x (s)</option>
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175 <option value="genbank">GENBANK (m)</option>
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176 <option value="gff">GFF (m)</option>
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177 <option value="hennig86">Hennig86 (m)</option>
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178 <option value="ig">Intelligenetics (m)</option>
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179 <option value="jackknifer">Jackknifer (m)</option>
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180 <option value="jackknifernon">Jackknifernon (m)</option>
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181 <option value="mega">Mega (m)</option>
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182 <option value="meganon">Meganon (m)</option>
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183 <option value="msf">Wisconsin Package GCG's MSF (m)</option>
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184 <option value="pir">NBRF (PIR) (m)</option>
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185 <option value="ncbi">NCBI style FASTA (m)</option>
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186 <option value="nexus">Nexus/PAUP (m)</option>
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187 <option value="nexusnon">Nexusnon/PAUPnon (m)</option>
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188 <option value="phylip">PHYLIP interleaved (m)</option>
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189 <option value="phylipnon">PHYLIP non-interleaved (m)</option>
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190 <option value="selex">SELEX (m)</option>
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191 <option value="staden">Staden (s)</option>
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192 <option value="strider">DNA strider (m)</option>
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193 <option value="swiss">SwisProt entry (m)</option>
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194 <option value="text">Plain sequence (s)</option>
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195 <option value="treecon">Treecon (m)</option>
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196 </param>
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197 </inputs>
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198 <outputs>
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199 <data name="out_file1" format="txt" />
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200 </outputs>
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201 <tests>
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202 <test>
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203 <param name="input1" value="emboss_transeq_out.fasta"/>
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204 <param name="cfile" value="Ehum.cut"/>
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205 <param name="out_format1" value="fasta"/>
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206 <output name="out_file1" file="emboss_backtranseq_out.fasta" ftype="fasta" />
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207 </test>
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208 <!-- Test with multiple sequence FASTA input -->
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209 <test>
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210 <param name="input1" value="emboss_getorf_out.fasta" />
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211 <param name="cfile" value="Ehum.cut"/>
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212 <param name="out_format1" value="fasta"/>
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213 <output name="out_file1" file="emboss_backtranseq_out2.fasta" ftype="fasta" />
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214 </test>
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215 </tests>
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216 <help>
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217 .. class:: warningmark
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218
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219 Back-translate a protein sequence to the nucleic acid sequence it is most likely to have come from. ``backtranseq`` uses a codon usage table which gives the frequency of usage of each codon for each amino acid. For each amino acid in the input sequence, the corresponding most frequently occuring codon is used in the nucleic acid sequence that is output.
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220
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221 -----
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222
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223 You can view the original documentation here_.
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224
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225 .. _here: http://emboss.open-bio.org/rel/rel6/apps/backtranseq.html
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226 </help>
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227 <expand macro="citations" />
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228 </tool>