Mercurial > repos > devteam > emboss_5
annotate emboss_dottup.xml @ 12:ace31bbde4c0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9d484642914b581ce35f254466b849d3c4c2c06c
| author | iuc |
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| date | Thu, 23 Feb 2017 09:43:32 -0500 |
| parents | 0e2484b6829b |
| children | 27c43fb015f0 |
| rev | line source |
|---|---|
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
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1 <tool id="EMBOSS: dottup26" name="dottup" version="5.0.0.1"> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
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2 <description>Displays a wordmatch dotplot of two sequences</description> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
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changeset
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3 <macros> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
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changeset
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4 <import>macros.xml</import> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
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changeset
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5 </macros> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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6 <expand macro="requirements" /> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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7 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' dottup -asequence '$input1' -bsequence '$input2' -goutfile '$out_file1' -wordsize $wordsize -boxit $boxit -graph png -xygraph png -auto</command> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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8 <inputs> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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9 <param name="input1" type="data" format="data" label="Sequence 1" /> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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10 <param name="input2" type="data" format="data" label="Sequence 2" /> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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11 <param name="wordsize" type="integer" value="4" label="Word size" /> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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12 <param name="boxit" type="select" label="Draw a box around dotplot"> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
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changeset
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13 <option value="yes">Yes</option> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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14 <option value="no">No</option> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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15 </param> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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16 </inputs> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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17 <outputs> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
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diff
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18 <data name="out_file1" format="png" /> |
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9b98d3d903c6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
devteam
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changeset
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19 </outputs> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
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20 <!-- functional tests not possible since image output contains file name information and timestamp --> |
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9b98d3d903c6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
devteam
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diff
changeset
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21 <help> |
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9b98d3d903c6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
devteam
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22 You can view the original documentation here_. |
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9b98d3d903c6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
devteam
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23 |
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11
0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
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diff
changeset
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24 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dottup.html |
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9b98d3d903c6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
devteam
parents:
diff
changeset
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25 </help> |
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11
0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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26 <expand macro="citations" /> |
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0e2484b6829b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
iuc
parents:
10
diff
changeset
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27 </tool> |