comparison execute_dwt_IvC_all.xml @ 1:509993d9fdca draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_ivc_all commit f929353ffb0623f2218d7dec459c7da62f3b0d24"

0:91fad0f30fd3

<tool id="compute_p-values_second_moments_feature_occurrences_between_two_datasets_using_discrete_wavelet_transfom" name="Compute P-values and Second Moments for Feature Occurrences" version="1.0.0">
  <description>between two datasets using Discrete Wavelet Transfoms</description>
  
  <command interpreter="perl">
  	execute_dwt_IvC_all.pl $inputFile1 $inputFile2 $outputFile1 $outputFile2
  </command>

  <inputs>
  	<param format="tabular" name="inputFile1" type="data" label="Select the first input file"/>	
  	<param format="tabular" name="inputFile2" type="data" label="Select the second input file"/>
  </inputs>
  
  <outputs>
    <data format="tabular" name="outputFile1"/> 
    <data format="pdf" name="outputFile2"/>
  </outputs>
  	
  <help> 

.. class:: infomark

**What it does**

1:509993d9fdca

<tool id="compute_p-values_second_moments_feature_occurrences_between_two_datasets_using_discrete_wavelet_transfom" name="Compute P-values and Second Moments for Feature Occurrences" version="1.0.1">
  <description>between two datasets using Discrete Wavelet Transfoms</description>
  <requirements>
    <requirement type="package" version="1.7.5">r-waveslim</requirement>
    <requirement type="package" version="4.6.8">r-wavethresh</requirement>
  </requirements>
  <command detect_errors="exit_code">
    Rscript --vanilla '$__tool_directory__/execute_dwt_IvC_all.R'
      '$inputFile1'
      '$inputFile2'
      '$outputFile2'
      '$outputFile1'
  </command>
  <inputs>
    <param format="tabular" name="inputFile1" type="data" label="Select the first input file"/>
    <param format="tabular" name="inputFile2" type="data" label="Select the second input file"/>
  </inputs>
  <outputs>
    <data format="tabular" name="outputFile1" label="${tool.name} on ${on_string}: statistics"/> 
    <data format="pdf" name="outputFile2" label="${tool.name} on ${on_string}: pdf"/>
  </outputs>
  <tests>
    <test>
      <param ftype="tabular" name="inputFile1" value="in1.tsv"/>
      <param ftype="tabular" name="inputFile2" value="in2.tsv"/>
      <output name="outputFile1" ftype="tabular">
        <assert_contents><has_line_matching expression="^motif\t1_moment2.*"/></assert_contents>
        <assert_contents><has_line_matching expression="^translinTarget.*" /></assert_contents>
      </output>
      <output name="outputFile2" ftype="pdf" file="out2.pdf" compare="sim_size"/>
    </test>
  </tests>
  <help> 

.. class:: infomark

**What it does**