Mercurial > repos > devteam > data_manager_twobit_builder
view data_manager/twobit_builder.xml @ 5:ced9f4a48806 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 82ad45497a7b2277a710c634378a4122fb75ce1f"
author | iuc |
---|---|
date | Mon, 18 Nov 2019 22:43:06 +0000 |
parents | fced964b054a |
children | b640d79b49cb |
line wrap: on
line source
<tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.3"> <requirements> <requirement type="package" version="377">ucsc-fatotwobit</requirement> </requirements> <description>builder</description> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/twobit_builder.py' '${out_file}' --fasta_filename '${all_fasta_source.fields.path}' --fasta_dbkey '${all_fasta_source.fields.dbkey}' --fasta_description '${all_fasta_source.fields.name}' ]]></command> <inputs> <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> <options from_data_table="all_fasta"/> </param> <param name="sequence_name" type="text" value="" label="Name of sequence" /> <param name="sequence_id" type="text" value="" label="ID for sequence" /> </inputs> <outputs> <data name="out_file" format="data_manager_json"/> </outputs> <tests> <test> <param name="all_fasta_source" value="sacCer2"/> <param name="sequence_name" value=""/> <output name="out_file" file="data_manager_twobit.json"/> </test> </tests> <help> .. class:: infomark **Notice:** If you leave name, description, or id blank, it will be generated automatically. </help> </tool>