view data_manager_conf.xml @ 1:298d15849a14 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit ddee21fa767f3234a4e5a9acfeeabdded32e7d01

<?xml version="1.0"?>
<data_managers>
    
    <data_manager tool_file="data_manager/twobit_builder.xml" id="twobit_builder" version="0.0.2">
        <data_table name="lastz_seqs">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="path" output_ref="out_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/seq/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation>
                </column>
            </output>
        </data_table>
        
        <data_table name="twobit">
            <output>
                <column name="value" />
                <column name="path" output_ref="out_file" ><!-- move happens above -->
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation>
                </column>
            </output>
        </data_table>
        
        <data_table name="alignseq_seq">
            <output>
                <column name="type" /><!-- always seq -->
                <column name="value" /><!-- also dbkey -->
                <column name="path" output_ref="out_file" ><!-- move happens above -->
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation>
                </column>
            </output>
        </data_table>
        
    </data_manager>
    
</data_managers>