Mercurial > repos > devteam > data_manager_twobit_builder
annotate tool-data/twobit.loc.sample @ 6:b640d79b49cb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
| author | iuc |
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| date | Thu, 28 Nov 2019 20:33:03 +0000 |
| parents | 26e3ae5f74ed |
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| rev | line source |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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1 #This is a sample file distributed with Galaxy that is used by some |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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2 #tools. The twobit.loc file has this format (white space characters |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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3 #are TAB characters): |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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4 # |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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5 #<Build> <FullPathToFile> |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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6 # |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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7 #So, for example, if you had droPer1 twobit files stored in |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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8 #/depot/data2/galaxy/droPer1/, then the twobit.loc entry |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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9 #would look like this: |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
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10 # |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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11 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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12 # |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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13 #and your /depot/data2/galaxy/droPer1/ directory would |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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14 #contain all of your twobit files (e.g.): |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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15 # |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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16 #-rw-rw-r-- 1 nate galaxy 48972650 2007-05-04 11:27 droPer1.2bit |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
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17 #...etc... |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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18 # |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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19 #Your twobit.loc file should include an entry per line for each twobit |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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20 #file you have stored. For example: |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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21 # |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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22 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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23 #apiMel2 /depot/data2/galaxy/apiMel2/apiMel2.2bit |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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24 #droAna1 /depot/data2/galaxy/droAna1/droAna1.2bit |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
changeset
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25 #droAna2 /depot/data2/galaxy/droAna2/droAna2.2bit |
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26e3ae5f74ed
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
devteam
parents:
diff
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26 #...etc... |