# HG changeset patch
# User devteam
# Date 1444745945 14400
# Node ID a1756ea43ba1bed6edfc985fd4a79f812a12e40a
# Parent  4551ccb17ca1ac6c66eddda91929338b3eff209e
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

diff -r 4551ccb17ca1 -r a1756ea43ba1 README
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Tue Oct 13 10:19:05 2015 -0400
@@ -0,0 +1,1 @@
+TODO
diff -r 4551ccb17ca1 -r a1756ea43ba1 data_manager/data_manager_sam_fasta_index_builder.py
--- a/data_manager/data_manager_sam_fasta_index_builder.py	Fri Mar 28 13:57:54 2014 -0400
+++ b/data_manager/data_manager_sam_fasta_index_builder.py	Tue Oct 13 10:19:05 2015 -0400
@@ -27,6 +27,7 @@
 
 def build_sam_index( data_manager_dict, fasta_filename, target_directory, dbkey, sequence_id, sequence_name, data_table_name=DEFAULT_DATA_TABLE_NAME ):
     #TODO: allow multiple FASTA input files
+    assert os.path.exists( fasta_filename ), 'FASTA file "%s" is missing, cannot build samtools index.' % fasta_filename
     fasta_base_name = os.path.split( fasta_filename )[-1]
     sym_linked_fasta_filename = os.path.join( target_directory, fasta_base_name )
     os.symlink( fasta_filename, sym_linked_fasta_filename )
diff -r 4551ccb17ca1 -r a1756ea43ba1 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Mar 28 13:57:54 2014 -0400
+++ b/tool_dependencies.xml	Tue Oct 13 10:19:05 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="233326db3402" name="package_samtools_0_1_19" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>