Mercurial > repos > devteam > data_manager_sam_fasta_index_builder
comparison data_manager_conf.xml @ 11:fd3d48691203 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sam_fasta_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
author | iuc |
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date | Thu, 05 Dec 2024 06:47:31 +0000 |
parents | 6af5a435d20d |
children |
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10:6af5a435d20d | 11:fd3d48691203 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <data_managers> | 2 <data_managers> |
3 | |
4 <data_manager tool_file="data_manager/data_manager_sam_fasta_index_builder.xml" id="sam_fasta_index_builder"> | 3 <data_manager tool_file="data_manager/data_manager_sam_fasta_index_builder.xml" id="sam_fasta_index_builder"> |
5 <data_table name="fasta_indexes"> | 4 <data_table name="fasta_indexes"> |
6 <output> | 5 <output> |
7 <column name="value" /> | 6 <column name="value" /> |
8 <column name="dbkey" /> | 7 <column name="dbkey" /> |
9 <column name="name" /> | 8 <column name="name" /> |
10 <column name="path" output_ref="out_file" > | 9 <column name="path" output_ref="out_file" > |
11 <move type="directory" relativize_symlinks="True"> | 10 <move type="directory" relativize_symlinks="True"> |
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> | 11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> |
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/sam_indexes/${value}</target> | 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/sam_fasta_index/v1/${value}</target> |
14 </move> | 13 </move> |
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/sam_indexes/${value}/${path}</value_translation> | 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/sam_fasta_index/v1/${value}/${path}</value_translation> |
16 <value_translation type="function">abspath</value_translation> | 15 <value_translation type="function">abspath</value_translation> |
17 </column> | 16 </column> |
18 </output> | 17 </output> |
19 </data_table> | 18 </data_table> |
20 </data_manager> | 19 </data_manager> |
21 | |
22 </data_managers> | 20 </data_managers> |