Mercurial > repos > devteam > data_manager_sam_fasta_index_builder
comparison test-data/all_fasta.loc @ 7:8578af9c5fbb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sam_fasta_index_builder commit 72fb3d356a87d2b555572486e7901449c3bdb568"
author | iuc |
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date | Mon, 18 Nov 2019 20:07:12 +0000 |
parents | |
children | fd3d48691203 |
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6:406896e00d0e | 7:8578af9c5fbb |
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1 #This file lists the locations and dbkeys of all the fasta files | |
2 #under the "genome" directory (a directory that contains a directory | |
3 #for each build). The script extract_fasta.py will generate the file | |
4 #all_fasta.loc. This file has the format (white space characters are | |
5 #TAB characters): | |
6 # | |
7 #<unique_build_id> <dbkey> <display_name> <file_path> | |
8 # | |
9 #So, all_fasta.loc could look something like this: | |
10 # | |
11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa | |
12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa | |
13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa | |
14 # | |
15 #Your all_fasta.loc file should contain an entry for each individual | |
16 #fasta file. So there will be multiple fasta files for each build, | |
17 #such as with hg19 above. | |
18 # | |
19 phiX174 phiX174 phiX174 ${__HERE__}/phiX174.fasta |