Mercurial > repos > devteam > data_manager_hisat_index_builder

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
author devteam
date Fri, 06 Nov 2015 14:17:24 -0500
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8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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1 <?xml version="1.0"?>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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2 <data_managers>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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3 <data_manager tool_file="data_manager/hisat_index_builder.xml" id="hisat_index_builder" version="0.0.1">
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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4 <data_table name="hisat_indexes">
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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diff changeset
5 <output>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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6 <column name="value" />
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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7 <column name="dbkey" />
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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8 <column name="name" />
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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9 <column name="path" output_ref="out_file" >
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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10 <move type="directory" relativize_symlinks="True">
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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diff changeset
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/hisat_index/${value}</target>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
diff changeset
13 </move>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/hisat_index/${value}/${path}</value_translation>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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15 <value_translation type="function">abspath</value_translation>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
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16 </column>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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17 </output>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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18 </data_table>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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19 </data_manager>
8082f04de7ae planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_hisat_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
devteam
parents:
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20 </data_managers>