# HG changeset patch
# User iuc
# Date 1588060657 0
# Node ID 3d628f1e1bef4d883b0778d1ee23c409b7059c55
# Parent  8dd4076813efe7f053346b49d79d303c70191aaa
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 04825a097d217d30deb5fcb6906fe718023e25b6"

diff -r 8dd4076813ef -r 3d628f1e1bef data_manager/data_manager.py
--- a/data_manager/data_manager.py	Tue Apr 04 17:50:42 2017 -0400
+++ b/data_manager/data_manager.py	Tue Apr 28 07:57:37 2020 +0000
@@ -56,7 +56,8 @@
     output_path = os.path.abspath(os.path.join(os.getcwd(), 'taxonomy'))
     for filename in os.listdir(workdir):
         shutil.move(os.path.join(output_path, filename), target_directory)
-    file(args.output, 'w').write(json.dumps(data_manager_json))
+    with open(args.output, 'w') as out:
+        out.write(json.dumps(data_manager_json, sort_keys=True))
 
 
 if __name__ == '__main__':
diff -r 8dd4076813ef -r 3d628f1e1bef data_manager/ncbi_taxonomy_fetcher.xml
--- a/data_manager/ncbi_taxonomy_fetcher.xml	Tue Apr 04 17:50:42 2017 -0400
+++ b/data_manager/ncbi_taxonomy_fetcher.xml	Tue Apr 28 07:57:37 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.0">
+<tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.1">
     <description>taxonomy downloader</description>
     <command detect_errors="exit_code">
     <![CDATA[
@@ -14,7 +14,7 @@
     </command>
     <inputs>
         <param name="database_name" type="text" optional="true" label="Name for this database" help="Enter a unique identifier, or leave blank for today's date" />
-        <param name="taxonomy_url" type="text" label="Enter URL for taxonomy files" />
+        <param name="taxonomy_url" type="text" value='ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz' label="Enter URL for taxonomy files" />
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json" />