Mercurial > repos > devteam > data_manager_fetch_genome_dbkeys_all_fasta
diff data_manager_conf.xml @ 0:c89e003f518a draft
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| author | devteam |
|---|---|
| date | Tue, 03 Feb 2015 10:05:30 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Tue Feb 03 10:05:30 2015 -0500 @@ -0,0 +1,36 @@ +<?xml version="1.0"?> +<data_managers> + + <data_manager tool_file="data_manager/data_manager_fetch_genome_all_fasta_dbkeys.xml" id="fetch_genome_all_fasta_dbkeys"> + <data_table name="all_fasta"> + <output> + <column name="value" /> + <column name="dbkey" /> + <column name="name" /> + <column name="path" output_ref="out_file" > + <move type="file"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="__dbkeys__"> + <output> + <column name="value" /> + <column name="name" /> + <column name="len_path" output_ref="out_file" > + <move type="file"> + <source>${len_path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> + +</data_managers>