Mercurial > repos > devteam > data_manager_fetch_genome_dbkeys_all_fasta
comparison data_manager_conf.xml @ 13:cd0196536dfd draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 57d05675396f0b44265fb4dbc8f9f891c6073219
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2024 06:47:24 +0000 |
| parents | c89e003f518a |
| children |
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| 12:545a0f7663ef | 13:cd0196536dfd |
|---|---|
| 8 <column name="dbkey" /> | 8 <column name="dbkey" /> |
| 9 <column name="name" /> | 9 <column name="name" /> |
| 10 <column name="path" output_ref="out_file" > | 10 <column name="path" output_ref="out_file" > |
| 11 <move type="file"> | 11 <move type="file"> |
| 12 <source>${path}</source> | 12 <source>${path}</source> |
| 13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target> | 13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/seq/${path}</target> |
| 14 </move> | 14 </move> |
| 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation> | 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/seq/${path}</value_translation> |
| 16 <value_translation type="function">abspath</value_translation> | 16 <value_translation type="function">abspath</value_translation> |
| 17 </column> | 17 </column> |
| 18 </output> | 18 </output> |
| 19 </data_table> | 19 </data_table> |
| 20 <data_table name="__dbkeys__"> | 20 <data_table name="__dbkeys__"> |
| 22 <column name="value" /> | 22 <column name="value" /> |
| 23 <column name="name" /> | 23 <column name="name" /> |
| 24 <column name="len_path" output_ref="out_file" > | 24 <column name="len_path" output_ref="out_file" > |
| 25 <move type="file"> | 25 <move type="file"> |
| 26 <source>${len_path}</source> | 26 <source>${len_path}</source> |
| 27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target> | 27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/len/${len_path}</target> |
| 28 </move> | 28 </move> |
| 29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation> | 29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/len/${len_path}</value_translation> |
| 30 <value_translation type="function">abspath</value_translation> | 30 <value_translation type="function">abspath</value_translation> |
| 31 </column> | 31 </column> |
| 32 </output> | 32 </output> |
| 33 </data_table> | 33 </data_table> |
| 34 </data_manager> | 34 </data_manager> |