diff data_manager/make_json.py @ 10:1e701a731d48 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken_database/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"

--- a/data_manager/make_json.py	Tue Aug 18 15:35:38 2020 +0000
+++ b/data_manager/make_json.py	Sun Nov 22 12:41:47 2020 +0000
@@ -10,14 +10,15 @@
     data_manager_entry['name'] = args.database
     data_manager_entry['path'] = '.'
     data_manager_json = dict(data_tables=dict(kraken_databases=data_manager_entry))
-    params = json.loads(open(args.output).read())
+    with open(args.output) as fh:
+        params = json.load(fh)
     target_directory = params['output_data'][0]['extra_files_path']
     os.mkdir(target_directory)
     output_path = os.path.join(os.getcwd(), 'kraken-database')
     for filename in os.listdir(output_path):
         shutil.move(os.path.join(output_path, filename), target_directory)
-    with open(args.output, 'w') as out:
-        out.write(json.dumps(data_manager_json, sort_keys=True))
+    with open(args.output, 'w') as fh:
+        json.dump(data_manager_json, fh, sort_keys=True)
 
 
 if __name__ == '__main__':