comparison data_manager/make_json.py @ 5:6f0294046f41 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken_database/ commit 8652f36a3a3838dca989426961561e81432acf4f

4:1de1817a8a57

import json
import argparse
import os
import shutil

parser = argparse.ArgumentParser(description='Create data manager json.')
parser.add_argument('--db', dest='database', action='store', help='Database name')
parser.add_argument('--out', dest='output', action='store', help='JSON filename')

args = parser.parse_args()

def main(args):
    data_manager_entry = {}
    data_manager_entry['value'] = args.database.lower()
    data_manager_entry['name'] = args.database

    output_path = os.path.join(os.getcwd(), 'kraken-database')
    for filename in os.listdir(output_path):
        shutil.move(os.path.join(output_path, filename), target_directory)
    file(args.output, 'w').write(json.dumps(data_manager_json))

if __name__ == '__main__':
    main(args)

5:6f0294046f41

import argparse
import json
import os
import shutil


def main(args):
    data_manager_entry = {}
    data_manager_entry['value'] = args.database.lower()
    data_manager_entry['name'] = args.database

    output_path = os.path.join(os.getcwd(), 'kraken-database')
    for filename in os.listdir(output_path):
        shutil.move(os.path.join(output_path, filename), target_directory)
    file(args.output, 'w').write(json.dumps(data_manager_json))


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Create data manager json.')
    parser.add_argument('--db', dest='database', action='store', help='Database name')
    parser.add_argument('--out', dest='output', action='store', help='JSON filename')
    args = parser.parse_args()
    main(args)