comparison data_manager/make_json.py @ 8:1d616842e1db draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken_database/ commit 8b77954efb8d46dfb3bec5421819076f3757ad06"

7:5b0724200665

    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    output_path = os.path.join(os.getcwd(), 'kraken-database')
    for filename in os.listdir(output_path):
        shutil.move(os.path.join(output_path, filename), target_directory)
    file(args.output, 'w').write(json.dumps(data_manager_json))


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Create data manager json.')
    parser.add_argument('--db', dest='database', action='store', help='Database name')

8:1d616842e1db

    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    output_path = os.path.join(os.getcwd(), 'kraken-database')
    for filename in os.listdir(output_path):
        shutil.move(os.path.join(output_path, filename), target_directory)
    with open(args.output, 'w') as out:
        out.write(json.dumps(data_manager_json, sort_keys=True))


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Create data manager json.')
    parser.add_argument('--db', dest='database', action='store', help='Database name')