Mercurial > repos > devteam > data_manager_bowtie2_index_builder
diff data_manager_conf.xml @ 13:8bf75f813413 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2024 06:46:58 +0000 |
| parents | 16230154ee87 |
| children |
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--- a/data_manager_conf.xml Sun Apr 16 08:25:58 2023 +0000 +++ b/data_manager_conf.xml Thu Dec 05 06:46:58 2024 +0000 @@ -1,6 +1,5 @@ <?xml version="1.0"?> <data_managers> - <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder"> <data_table name="bowtie2_indexes"> <output> @@ -10,9 +9,9 @@ <column name="path" output_ref="out_file" > <move type="directory" relativize_symlinks="True"> <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie2_index/${value}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/bowtie_index/v2/${value}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bowtie_index/v2/${value}/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -25,11 +24,10 @@ <column name="name" /> <column name="path" output_ref="out_file" > <!-- no move, always happens as part of bowtie2 and uses that path --> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bowtie_index/v2/${value}/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> - </data_managers>