Mercurial > repos > devteam > cummerbund
view cummeRbund_options.py @ 1:aefbcaf15a94 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund commit f3f0bef4a450aafab3c6b05a27647471f93b22f3
author | devteam |
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date | Thu, 23 Feb 2017 20:23:50 -0500 |
parents | e462121e8269 |
children | 4bbfacecedd3 |
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import sqlite3 def get_genes( database_path ): conn = sqlite3.connect( database_path ) gene_ids = conn.execute( 'SELECT gene_short_name, gene_id FROM genes ORDER BY gene_short_name' ) return [ ( gene_id[ 0 ], gene_id[ 1 ], False ) for gene_id in gene_ids ] def get_samples( database_path ): conn = sqlite3.connect( database_path ) samples = conn.execute( 'SELECT sample_name FROM samples ORDER BY sample_name' ) return [ ( sample[ 0 ], sample[ 0 ], False ) for sample in samples ]