comparison cuff_macros.xml @ 5:dd79e9e3aa10 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffquant commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"

4:d2daca60e139

            #end if
            --labels $labels
  </token>
  <xml name="cufflinks_gtf_inputs">
    <param format="gtf" name="inputs" type="data" label="GTF file(s) produced by Cufflinks" help="" multiple="true" />
    <repeat name="additional_inputs" title="Additional GTF Inputs (Lists)">
      <param format="gtf" name="additional_inputs" type="data_collection" label="GTF file(s) produced by Cufflinks" help="" />
    </repeat>
  </xml>
  <token name="@CUFFLINKS_GTF_INPUTS@">
            ## Inputs.
            #for $input_file in $inputs:
                '${input_file}'
            #end for
            #for $additional_input in $additional_inputs:
                #for $input_file in $additional_input.additional_inputs:
                    '${input_file}'
                #end for
            #end for
  </token>
  <token name="@HAS_MULTIPLE_INPUTS@">getattr(inputs, "__len__", [].__len__)() >= 2</token>
</macros>

5:dd79e9e3aa10

            #end if
            --labels $labels
  </token>
  <xml name="cufflinks_gtf_inputs">
    <param format="gtf" name="inputs" type="data" label="GTF file(s) produced by Cufflinks" help="" multiple="true" />
  </xml>
  <token name="@CUFFLINKS_LINK_GTF_INPUTS@"><![CDATA[
            ## Inputs.
            #for $i, $input_file in enumerate($inputs):
                ln -s '${input_file}' input_$i &&
            #end for
  ]]></token>
  <token name="@CUFFLINKS_GTF_INPUTS@">
            ## Inputs.
            #for $i, $input_file in enumerate($inputs):
                'input_$i'
            #end for
  </token>
  <token name="@HAS_MULTIPLE_INPUTS@">getattr(inputs, "__len__", [].__len__)() >= 2</token>

  <xml name="citations">
    <citations>
        <citation type="doi">10.1038/nbt.1621</citation>
        <yield/>
    </citations>
  </xml>

</macros>