Mercurial > repos > devteam > cuffnorm
comparison cuffnorm_wrapper.xml @ 3:47dccbe0516c draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffnorm commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5
| author | devteam |
|---|---|
| date | Sun, 19 Feb 2017 12:08:50 -0500 |
| parents | 885314f0d369 |
| children | dc97f71022e5 |
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| 2:885314f0d369 | 3:47dccbe0516c |
|---|---|
| 1 <tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.1"> | 1 <tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.2"> |
| 2 <description>Create normalized expression levels</description> | 2 <description>Create normalized expression levels</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>cuff_macros.xml</import> | 4 <import>cuff_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <expand macro="stdio" /> | |
| 8 <version_command>cuffnorm 2>&1 | head -n 1</version_command> | 7 <version_command>cuffnorm 2>&1 | head -n 1</version_command> |
| 9 <command> | 8 <command detect_errors="aggressive"> |
| 10 cuffnorm | 9 cuffnorm |
| 11 --no-update-check | 10 --no-update-check |
| 12 --num-threads="\${GALAXY_SLOTS:-4}" | 11 --num-threads="\${GALAXY_SLOTS:-4}" |
| 13 --library-norm-method=$library_norm_method | 12 --library-norm-method=$library_norm_method |
| 14 --output-format=$output_format | 13 --output-format=$output_format |