Mercurial > repos > devteam > cuffmerge
comparison cuffmerge_wrapper.xml @ 5:8cedf303be28 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffmerge commit 92be38a0f40ef6d6ccb55999f3eb8bf960e376c8"
| author | iuc |
|---|---|
| date | Fri, 20 Aug 2021 16:39:54 +0000 |
| parents | 7a9ca385b471 |
| children | f4bc1b2fc4d4 |
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| 4:7a9ca385b471 | 5:8cedf303be28 |
|---|---|
| 1 <tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.2"> | 1 <tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.3"> |
| 2 <description>merge together several Cufflinks assemblies</description> | 2 <description>merge together several Cufflinks assemblies</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>cuff_macros.xml</import> | 4 <import>cuff_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 18 | 18 |
| 19 ## Use sequence data? | 19 ## Use sequence data? |
| 20 #if $seq_data.use_seq_data == "Yes": | 20 #if $seq_data.use_seq_data == "Yes": |
| 21 -s | 21 -s |
| 22 #if $seq_data.seq_source.index_source == "history": | 22 #if $seq_data.seq_source.index_source == "history": |
| 23 --ref_file '${seq_data.seq_source.ref_file}' | 23 '${seq_data.seq_source.ref_file}' |
| 24 #else: | 24 #else: |
| 25 --index '${seq_data.seq_source.index.fields.path}' | 25 '${seq_data.seq_source.index.fields.path}' |
| 26 #end if | 26 #end if |
| 27 #end if | 27 #end if |
| 28 | 28 |
| 29 --min-isoform-fraction="${min_isoform_fraction}" | 29 --min-isoform-fraction="${min_isoform_fraction}" |
| 30 assembly_GTF_list.txt | 30 assembly_GTF_list.txt |