# HG changeset patch
# User iuc
# Date 1728126889 0
# Node ID a10919766c11e706f438dbdeab8daf173b880d19
# Parent  456797205473b42e63ca0ee54b85229a60b5cf99
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffdiff commit 80b06e80066b32ad53ed418628992f056444256f

diff -r 456797205473 -r a10919766c11 cuff_macros.xml
--- a/cuff_macros.xml	Sat Nov 27 09:56:54 2021 +0000
+++ b/cuff_macros.xml	Sat Oct 05 11:14:49 2024 +0000
@@ -1,9 +1,10 @@
 <macros>
-    <token name="@VERSION@">2.2.1</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
+    <token name="@PROFILE@">23.1</token>
 
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.1">cufflinks</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">cufflinks</requirement>
             <yield />
         </requirements>
     </xml>
diff -r 456797205473 -r a10919766c11 cuffdiff_wrapper.xml
--- a/cuffdiff_wrapper.xml	Sat Nov 27 09:56:54 2021 +0000
+++ b/cuffdiff_wrapper.xml	Sat Oct 05 11:14:49 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="cuffdiff" name="Cuffdiff" version="@VERSION@.6">
+<tool id="cuffdiff" name="Cuffdiff" version="@TOOL_VERSION@.7" profile="@PROFILE@">
     <description>find significant changes in transcript expression, splicing, and promoter use</description>
     <macros>
         <import>cuff_macros.xml</import>
@@ -262,7 +262,7 @@
     </outputs>
 
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <!--
                 cuffdiff cuffcompare_out5.gtf cuffdiff_in1.sam cuffdiff_in2.sam
             -->
@@ -287,7 +287,7 @@
             <param name="sAdditional" value="No"/>
             <output name="output_cummerbund" ftype="sqlite" file="cuffdiff_out.sqlite" compare="sim_size" />
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <!--
                 Use a list collection as conditions input
                 cuffdiff cuffcompare_out5.gtf cuffdiff_in1.sam cuffdiff_in2.sam
@@ -311,7 +311,7 @@
             <param name="sAdditional" value="No"/>
             <output name="output_cummerbund" ftype="sqlite" file="cuffdiff_out.sqlite" compare="sim_size" />
         </test>
-        <test>
+        <test expect_num_outputs="11">
             <!--
                 cuffdiff cuffcompare_out5.gtf cuffdiff_in1.sam cuffdiff_in2.sam
             -->