view test-data/output.stats @ 5:a739ea0fef9d draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare commit 80b06e80066b32ad53ed418628992f056444256f

# Cuffcompare v2.2.1 | Command line was:
#cuffcompare -o output -r cuffcompare_in3.gtf -R -e 100 -d 100 cuffcompare_in1.gtf cuffcompare_in2.gtf
#

#= Summary for dataset: cuffcompare_in1.gtf :
#     Query mRNAs :      50 in      50 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       1 in       1 loci  (1 multi-exon)
# Super-loci w/ reference transcripts:        1
#--------------------|   Sn   |  Sp   |  fSn |  fSp  
        Base level: 	  2.2	  2.3	  - 	  - 
        Exon level: 	  0.0	  0.0	  0.0	  0.0
      Intron level: 	  0.0	 -nan	  0.0	 -nan
Intron chain level: 	  0.0	 -nan	  0.0	 -nan
  Transcript level: 	  0.0	  0.0	  0.0	  0.0
       Locus level: 	  0.0	  0.0	  0.0	  0.0

     Matching intron chains:       0
              Matching loci:       0

          Missed exons:       2/3	( 66.7%)
           Novel exons:      49/50	( 98.0%)
        Missed introns:       2/2	(100.0%)
           Missed loci:       0/1	(  0.0%)
            Novel loci:      49/50	( 98.0%)

#= Summary for dataset: cuffcompare_in2.gtf :
#     Query mRNAs :      50 in      50 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       0 in       0 loci  (0 multi-exon)

 Total union super-loci across all input datasets: 87 
  (0 multi-transcript, ~1.1 transcripts per locus)