Mercurial > repos > devteam > cuffcompare
view test-data/output.stats @ 4:806c27c97df7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
| author | iuc |
|---|---|
| date | Tue, 16 Jun 2020 16:56:55 +0000 |
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| children |
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# Cuffcompare v2.2.1 | Command line was: #cuffcompare -o output -r cuffcompare_in3.gtf -R -e 100 -d 100 cuffcompare_in1.gtf cuffcompare_in2.gtf # #= Summary for dataset: cuffcompare_in1.gtf : # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 1 in 1 loci (1 multi-exon) # Super-loci w/ reference transcripts: 1 #--------------------| Sn | Sp | fSn | fSp Base level: 2.2 2.3 - - Exon level: 0.0 0.0 0.0 0.0 Intron level: 0.0 -nan 0.0 -nan Intron chain level: 0.0 -nan 0.0 -nan Transcript level: 0.0 0.0 0.0 0.0 Locus level: 0.0 0.0 0.0 0.0 Matching intron chains: 0 Matching loci: 0 Missed exons: 2/3 ( 66.7%) Novel exons: 49/50 ( 98.0%) Missed introns: 2/2 (100.0%) Missed loci: 0/1 ( 0.0%) Novel loci: 49/50 ( 98.0%) #= Summary for dataset: cuffcompare_in2.gtf : # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 0 in 0 loci (0 multi-exon) Total union super-loci across all input datasets: 87 (0 multi-transcript, ~1.1 transcripts per locus)