Mercurial > repos > devteam > cuffcompare
diff test-data/output.stats @ 4:806c27c97df7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
| author | iuc |
|---|---|
| date | Tue, 16 Jun 2020 16:56:55 +0000 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.stats Tue Jun 16 16:56:55 2020 +0000 @@ -0,0 +1,33 @@ +# Cuffcompare v2.2.1 | Command line was: +#cuffcompare -o output -r cuffcompare_in3.gtf -R -e 100 -d 100 cuffcompare_in1.gtf cuffcompare_in2.gtf +# + +#= Summary for dataset: cuffcompare_in1.gtf : +# Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) +# (0 multi-transcript loci, ~1.0 transcripts per locus) +# Reference mRNAs : 1 in 1 loci (1 multi-exon) +# Super-loci w/ reference transcripts: 1 +#--------------------| Sn | Sp | fSn | fSp + Base level: 2.2 2.3 - - + Exon level: 0.0 0.0 0.0 0.0 + Intron level: 0.0 -nan 0.0 -nan +Intron chain level: 0.0 -nan 0.0 -nan + Transcript level: 0.0 0.0 0.0 0.0 + Locus level: 0.0 0.0 0.0 0.0 + + Matching intron chains: 0 + Matching loci: 0 + + Missed exons: 2/3 ( 66.7%) + Novel exons: 49/50 ( 98.0%) + Missed introns: 2/2 (100.0%) + Missed loci: 0/1 ( 0.0%) + Novel loci: 49/50 ( 98.0%) + +#= Summary for dataset: cuffcompare_in2.gtf : +# Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) +# (0 multi-transcript loci, ~1.0 transcripts per locus) +# Reference mRNAs : 0 in 0 loci (0 multi-exon) + + Total union super-loci across all input datasets: 87 + (0 multi-transcript, ~1.1 transcripts per locus)