Mercurial > repos > devteam > cuffcompare
comparison test-data/output.stats @ 4:806c27c97df7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
| author | iuc |
|---|---|
| date | Tue, 16 Jun 2020 16:56:55 +0000 |
| parents | |
| children |
comparison
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| 3:5aac9b9d6f2a | 4:806c27c97df7 |
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| 1 # Cuffcompare v2.2.1 | Command line was: | |
| 2 #cuffcompare -o output -r cuffcompare_in3.gtf -R -e 100 -d 100 cuffcompare_in1.gtf cuffcompare_in2.gtf | |
| 3 # | |
| 4 | |
| 5 #= Summary for dataset: cuffcompare_in1.gtf : | |
| 6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) | |
| 7 # (0 multi-transcript loci, ~1.0 transcripts per locus) | |
| 8 # Reference mRNAs : 1 in 1 loci (1 multi-exon) | |
| 9 # Super-loci w/ reference transcripts: 1 | |
| 10 #--------------------| Sn | Sp | fSn | fSp | |
| 11 Base level: 2.2 2.3 - - | |
| 12 Exon level: 0.0 0.0 0.0 0.0 | |
| 13 Intron level: 0.0 -nan 0.0 -nan | |
| 14 Intron chain level: 0.0 -nan 0.0 -nan | |
| 15 Transcript level: 0.0 0.0 0.0 0.0 | |
| 16 Locus level: 0.0 0.0 0.0 0.0 | |
| 17 | |
| 18 Matching intron chains: 0 | |
| 19 Matching loci: 0 | |
| 20 | |
| 21 Missed exons: 2/3 ( 66.7%) | |
| 22 Novel exons: 49/50 ( 98.0%) | |
| 23 Missed introns: 2/2 (100.0%) | |
| 24 Missed loci: 0/1 ( 0.0%) | |
| 25 Novel loci: 49/50 ( 98.0%) | |
| 26 | |
| 27 #= Summary for dataset: cuffcompare_in2.gtf : | |
| 28 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) | |
| 29 # (0 multi-transcript loci, ~1.0 transcripts per locus) | |
| 30 # Reference mRNAs : 0 in 0 loci (0 multi-exon) | |
| 31 | |
| 32 Total union super-loci across all input datasets: 87 | |
| 33 (0 multi-transcript, ~1.1 transcripts per locus) |