Mercurial > repos > devteam > count_gff_features

annotate test-data/gff2bed_in2.gff @ 0:002a1e6ef8d9 draft

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Imported from capsule None
author devteam
date Mon, 28 Jul 2014 11:30:20 -0400
parents
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002a1e6ef8d9 Imported from capsule None
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1 chr1 Cufflinks exon 3204563 3207049 1000 - . gene_id "Xkr4"; transcript_id "Xkr4"; exon_number "1"; FPKM "0.3924207844"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.845549"; cov "0.022289";
002a1e6ef8d9 Imported from capsule None
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2 chr1 Cufflinks exon 3411783 3411982 1000 - . gene_id "Xkr4"; transcript_id "Xkr4"; exon_number "2"; FPKM "0.3924207844"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.845549"; cov "0.022289";
002a1e6ef8d9 Imported from capsule None
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3 chr1 Cufflinks exon 3660633 3661579 1000 - . gene_id "Xkr4"; transcript_id "Xkr4"; exon_number "3"; FPKM "0.3924207844"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.845549"; cov "0.022289";
002a1e6ef8d9 Imported from capsule None
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4 chr1 Cufflinks exon 4481009 4482749 1000 - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "1"; FPKM "1.5186976896"; frac "1.000000"; conf_lo "0.558189"; conf_hi "2.479206"; cov "0.086262";
002a1e6ef8d9 Imported from capsule None
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diff changeset
5 chr1 Cufflinks exon 4483181 4483547 1000 - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "2"; FPKM "1.5186976896"; frac "1.000000"; conf_lo "0.558189"; conf_hi "2.479206"; cov "0.086262";
002a1e6ef8d9 Imported from capsule None
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diff changeset
6 chr1 Cufflinks exon 4483853 4483944 1000 - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "3"; FPKM "1.5186976896"; frac "1.000000"; conf_lo "0.558189"; conf_hi "2.479206"; cov "0.086262";
002a1e6ef8d9 Imported from capsule None
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7 chr1 Cufflinks exon 4485217 4486023 1000 - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "4"; FPKM "1.5186976896"; frac "1.000000"; conf_lo "0.558189"; conf_hi "2.479206"; cov "0.086262";
002a1e6ef8d9 Imported from capsule None
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diff changeset
8 chr1 Cufflinks exon 4486372 4486494 1000 - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "5"; FPKM "1.5186976896"; frac "1.000000"; conf_lo "0.558189"; conf_hi "2.479206"; cov "0.086262";
002a1e6ef8d9 Imported from capsule None
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9 chr1 Cufflinks exon 4763279 4766882 1000 - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "1"; FPKM "9.1596238357"; frac "1.000000"; conf_lo "7.124003"; conf_hi "11.195245"; cov "0.520266";
002a1e6ef8d9 Imported from capsule None
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10 chr1 Cufflinks exon 4767606 4767729 1000 - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "2"; FPKM "9.1596238357"; frac "1.000000"; conf_lo "7.124003"; conf_hi "11.195245"; cov "0.520266";
002a1e6ef8d9 Imported from capsule None
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diff changeset
11 chr1 Cufflinks exon 4772649 4772814 1000 - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "3"; FPKM "9.1596238357"; frac "1.000000"; conf_lo "7.124003"; conf_hi "11.195245"; cov "0.520266";
002a1e6ef8d9 Imported from capsule None
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diff changeset
12 chr1 Cufflinks exon 4774032 4774186 1000 - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "4"; FPKM "9.1596238357"; frac "1.000000"; conf_lo "7.124003"; conf_hi "11.195245"; cov "0.520266";
002a1e6ef8d9 Imported from capsule None
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diff changeset
13 chr1 Cufflinks exon 4775654 4775807 1000 - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "5"; FPKM "9.1596238357"; frac "1.000000"; conf_lo "7.124003"; conf_hi "11.195245"; cov "0.520266";