diff column_maker.xml @ 10:beec6ecc7d3c draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_maker commit 06a92568f3409b035fd8a08725db20933d8d15e6

--- a/column_maker.xml	Thu Jul 28 15:27:54 2022 +0000
+++ b/column_maker.xml	Thu Aug 22 08:25:32 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="Add_a_column1" name="Compute" version="2.0">
+<tool id="Add_a_column1" name="Compute" version="2.1" profile="23.0">
     <description>on rows</description>
     <macros>
         <xml name="compute_repeat">
@@ -34,8 +34,8 @@
         </xml>
     </macros>
     <requirements>
-        <requirement type="package" version="3.8">python</requirement>
-        <requirement type="package" version="1.23.1">numpy</requirement>
+        <requirement type="package" version="3.12">python</requirement>
+        <requirement type="package" version="2.1.0">numpy</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
 python '$__tool_directory__/column_maker.py'
@@ -193,6 +193,11 @@
             </repeat>
             <output name="out_file1" file="column_maker_out4.tab" />
         </test>
+        <test>
+            <param name="cond" value="cos(pi)+sin(tau)*c2"/>
+            <param name="input" value="1.bed" ftype="bed" />
+            <output name="out_file1" file="column_maker_out5.interval"/>
+        </test>
         <!-- Test list column type in input -->
         <test>
             <param name="input" value="bed12.bed" ftype="bed12" />
@@ -311,13 +316,13 @@
 
 - The following built-in Python functions are available for use in expressions::
 
-    abs | all | any | ascii | bin | bool | chr | ceil | complex | divmod
-
-    exp | float | floor | format | hex | int | len | list | log | log10
+    abs | all | any | ascii | bin | bool | chr | complex | divmod | float | format | hex | int | len | list 
+    map | max | min | oct | ord | pow | range | reversed | round | set | sorted | str | sum | type
 
-    list | map | max | min | oct | ord | pow | range | reversed
-
-    round | set | sorted | sqrt | str | sum | type
+    acos | acosh | asin | asinh | atan | atan2 | atanh | cbrt | ceil | comb | copysign | cos | cosh | degrees 
+    dist | erf | erfc | exp | exp2 | expm1 | fabs | factorial | floor | fmod | frexp | fsum | gamma | gcd
+    hypot | inf | isclose | isfinite | isinf | isnan | isqrt | ldexp | lgamma | log | log10 | log1p | log2
+    modf | nextafter | perm | pow | prod | remainder | sin | sqrt | tan | tanh | tau | trunc | ulp
 
 - In addition the numpy function ``format_float_positional`` is available to
   control the formatting of floating point numbers.
@@ -434,5 +439,7 @@
 
 **Replacement value**: `.`
     ]]></help>
-    <citations />
+    <citations>
+        <citation type="doi">10.1093/nar/gkae410</citation>
+    </citations>
 </tool>