Mercurial > repos > devteam > cluster
comparison cluster.xml @ 3:1e895b74f29f draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:49:20 -0400 |
| parents | e84cc9cf3ba1 |
| children | 2108e2dc3d32 |
comparison
equal
deleted
inserted
replaced
| 2:e84cc9cf3ba1 | 3:1e895b74f29f |
|---|---|
| 8 <command interpreter="python">gops_cluster.py $input1 $output -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} -d $distance -m $minregions -o $returntype</command> | 8 <command interpreter="python">gops_cluster.py $input1 $output -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} -d $distance -m $minregions -o $returntype</command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param format="interval" name="input1" type="data"> | 10 <param format="interval" name="input1" type="data"> |
| 11 <label>Cluster intervals of</label> | 11 <label>Cluster intervals of</label> |
| 12 </param> | 12 </param> |
| 13 <param name="distance" size="5" type="integer" value="1" help="(bp)"> | 13 <param name="distance" type="integer" value="1" help="(bp)"> |
| 14 <label>max distance between intervals</label> | 14 <label>max distance between intervals</label> |
| 15 </param> | 15 </param> |
| 16 <param name="minregions" size="5" type="integer" value="2"> | 16 <param name="minregions" type="integer" value="2"> |
| 17 <label>min number of intervals per cluster</label> | 17 <label>min number of intervals per cluster</label> |
| 18 </param> | 18 </param> |
| 19 <param name="returntype" type="select" label="Return type"> | 19 <param name="returntype" type="select" label="Return type"> |
| 20 <option value="1">Merge clusters into single intervals</option> | 20 <option value="1">Merge clusters into single intervals</option> |
| 21 <option value="2">Find cluster intervals; preserve comments and order</option> | 21 <option value="2">Find cluster intervals; preserve comments and order</option> |