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view test-data/rgClustal_testout.log @ 0:de3662385a52 draft
Imported from capsule None
| author | devteam |
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| date | Thu, 23 Jan 2014 12:32:07 -0500 |
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CLUSTAL 2.1 Multiple Sequence Alignments Sequence type explicitly set to DNA Sequence format is Pearson Sequence 1: c_briggsae-chrII_+_/43862-46313 60 bp Sequence 2: c_remanei-Crem_Contig172_-_/123228-124941 60 bp Sequence 3: c_brenneri-Cbre_Contig60_+_/627772-630087 60 bp Sequence 4: c_elegans-II_+_/9706834-9708803 60 bp Sequence 5: c_briggsae-chrIfooI_+_/43862-46313 60 bp Sequence 6: c_remanei-Crem_Contig172foo_-_/123228-124941 60 bp Sequence 7: c_brenneri-Cbre_Contig60gak_+_/627772-630087 60 bp Sequence 8: c_elegans-II_+_more/9706834-9708803 60 bp Sequence 9: c_briggsae-chrII_+_bar/43862-46313 60 bp Sequence 10: c_remanei-Crem_Contig172zot_-_/123228-124941 60 bp Sequence 11: c_brenneri-Cbre_Contig60fee_+_/627772-630087 60 bp Sequence 12: c_elegans-II_+_meh/9706834-9708803 60 bp Start of Pairwise alignments Aligning... Sequences (1:2) Aligned. Score: 80 Sequences (1:3) Aligned. Score: 88 Sequences (1:4) Aligned. Score: 83 Sequences (1:5) Aligned. Score: 21 Sequences (1:6) Aligned. Score: 20 Sequences (1:7) Aligned. Score: 23 Sequences (1:8) Aligned. Score: 18 Sequences (1:9) Aligned. Score: 21 Sequences (1:10) Aligned. Score: 16 Sequences (1:11) Aligned. Score: 25 Sequences (1:12) Aligned. Score: 10 Sequences (2:3) Aligned. Score: 85 Sequences (2:4) Aligned. Score: 86 Sequences (2:5) Aligned. Score: 21 Sequences (2:6) Aligned. Score: 20 Sequences (2:7) Aligned. Score: 25 Sequences (2:8) Aligned. Score: 20 Sequences (2:9) Aligned. Score: 36 Sequences (2:10) Aligned. Score: 16 Sequences (2:11) Aligned. Score: 22 Sequences (2:12) Aligned. Score: 17 Sequences (3:4) Aligned. Score: 85 Sequences (3:5) Aligned. Score: 13 Sequences (3:6) Aligned. Score: 20 Sequences (3:7) Aligned. Score: 25 Sequences (3:8) Aligned. Score: 20 Sequences (3:9) Aligned. Score: 36 Sequences (3:10) Aligned. Score: 16 Sequences (3:11) Aligned. Score: 18 Sequences (3:12) Aligned. Score: 25 Sequences (4:5) Aligned. Score: 13 Sequences (4:6) Aligned. Score: 11 Sequences (4:7) Aligned. Score: 20 Sequences (4:8) Aligned. Score: 10 Sequences (4:9) Aligned. Score: 31 Sequences (4:10) Aligned. Score: 17 Sequences (4:11) Aligned. Score: 29 Sequences (4:12) Aligned. Score: 14 Sequences (5:6) Aligned. Score: 73 Sequences (5:7) Aligned. Score: 83 Sequences (5:8) Aligned. Score: 80 Sequences (5:9) Aligned. Score: 31 Sequences (5:10) Aligned. Score: 14 Sequences (5:11) Aligned. Score: 14 Sequences (5:12) Aligned. Score: 12 Sequences (6:7) Aligned. Score: 80 Sequences (6:8) Aligned. Score: 88 Sequences (6:9) Aligned. Score: 26 Sequences (6:10) Aligned. Score: 16 Sequences (6:11) Aligned. Score: 25 Sequences (6:12) Aligned. Score: 12 Sequences (7:8) Aligned. Score: 78 Sequences (7:9) Aligned. Score: 31 Sequences (7:10) Aligned. Score: 10 Sequences (7:11) Aligned. Score: 12 Sequences (7:12) Aligned. Score: 12 Sequences (8:9) Aligned. Score: 31 Sequences (8:10) Aligned. Score: 10 Sequences (8:11) Aligned. Score: 14 Sequences (8:12) Aligned. Score: 12 Sequences (9:10) Aligned. Score: 63 Sequences (9:11) Aligned. Score: 84 Sequences (9:12) Aligned. Score: 78 Sequences (10:11) Aligned. Score: 64 Sequences (10:12) Aligned. Score: 76 Sequences (11:12) Aligned. Score: 46 Guide tree file created: [infile_copy.dnd] There are 11 groups Start of Multiple Alignment Aligning... Group 1: Sequences: 2 Score:1045 Group 2: Sequences: 2 Score:1016 Group 3: Sequences: 4 Score:1001 Group 4: Sequences: 2 Score:313 Group 5: Sequences: 2 Score:731 Group 6: Sequences: 4 Score:516 Group 7: Sequences: 8 Score:344 Group 8: Sequences: 2 Score:1016 Group 9: Sequences: 2 Score:1054 Group 10: Sequences: 4 Score:945 Group 11: Sequences: 12 Score:380 Alignment Score 6283 CLUSTAL-Alignment file created [/share/shared/galaxy/database/files/002/dataset_2801.dat] Clustal created the following dnd file for your information: ( ( c_briggsae-chrII_+_/43862-46313:0.07349, c_brenneri-Cbre_Contig60_+_/627772-630087:0.04317) :0.02387, ( c_remanei-Crem_Contig172_-_/123228-124941:0.06114, c_elegans-II_+_/9706834-9708803:0.07219) :0.01779, ( ( ( c_briggsae-chrIfooI_+_/43862-46313:0.10368, c_brenneri-Cbre_Contig60gak_+_/627772-630087:0.06298) :0.01654, ( c_remanei-Crem_Contig172foo_-_/123228-124941:0.05765, c_elegans-II_+_more/9706834-9708803:0.05902) :0.06262) :0.31533, ( ( c_briggsae-chrII_+_bar/43862-46313:0.02327, c_brenneri-Cbre_Contig60fee_+_/627772-630087:0.13463) :0.05016, ( c_remanei-Crem_Contig172zot_-_/123228-124941:0.11667, c_elegans-II_+_meh/9706834-9708803:0.11737) :0.12013) :0.20951) :0.30133);