Mercurial > repos > devteam > clustalw
comparison rgClustalw.xml @ 1:ce785326df6e draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:14:40 -0400 |
| parents | de3662385a52 |
| children | bed27b5c0f63 |
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| 0:de3662385a52 | 1:ce785326df6e |
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| 22 #end if | 22 #end if |
| 23 </command> | 23 </command> |
| 24 <inputs> | 24 <inputs> |
| 25 <page> | 25 <page> |
| 26 <param format="fasta" name="input" type="data" label="Fasta File" /> | 26 <param format="fasta" name="input" type="data" label="Fasta File" /> |
| 27 <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" size="50" value="Clustal_run" /> | 27 <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" value="Clustal_run" /> |
| 28 <param name="dnarna" type="select" label="Data Type"> | 28 <param name="dnarna" type="select" label="Data Type"> |
| 29 <option value="DNA" selected="True">DNA nucleotide sequences</option> | 29 <option value="DNA" selected="True">DNA nucleotide sequences</option> |
| 30 <option value="PROTEIN">Protein sequences</option> | 30 <option value="PROTEIN">Protein sequences</option> |
| 31 </param> | 31 </param> |
| 32 <conditional name="outcontrol"> | 32 <conditional name="outcontrol"> |
| 55 <option value="part">only part of the alignment</option> | 55 <option value="part">only part of the alignment</option> |
| 56 </param> | 56 </param> |
| 57 <when value="complete"> | 57 <when value="complete"> |
| 58 </when> | 58 </when> |
| 59 <when value="part"> | 59 <when value="part"> |
| 60 <param name="seq_range_start" size="5" type="integer" value="1" label="start point" help="sequence range to write"> | 60 <param name="seq_range_start" type="integer" value="1" label="start point" help="sequence range to write"> |
| 61 </param> | 61 </param> |
| 62 <param name="seq_range_end" size="5" type="integer" value="99999" label="end point" > | 62 <param name="seq_range_end" type="integer" value="99999" label="end point" > |
| 63 </param> | 63 </param> |
| 64 </when> | 64 </when> |
| 65 </conditional> | 65 </conditional> |
| 66 </page> | 66 </page> |
| 67 </inputs> | 67 </inputs> |
| 123 | 123 |
| 124 .. _Clustfirst: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003732.html | 124 .. _Clustfirst: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003732.html |
| 125 | 125 |
| 126 .. _LGPL: http://www.gnu.org/copyleft/lesser.html | 126 .. _LGPL: http://www.gnu.org/copyleft/lesser.html |
| 127 | 127 |
| 128 </help> | 128 </help> |
| 129 | 129 <citations> |
| 130 <citation type="doi">10.1093/bioinformatics/btm404</citation> | |
| 131 </citations> | |
| 130 </tool> | 132 </tool> |
| 131 | 133 |