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0
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1
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2
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3
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4 CLUSTAL 2.1 Multiple Sequence Alignments
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5
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6
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7 Sequence type explicitly set to DNA
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8 Sequence format is Pearson
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9 Sequence 1: c_briggsae-chrII_+_/43862-46313 60 bp
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10 Sequence 2: c_remanei-Crem_Contig172_-_/123228-124941 60 bp
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11 Sequence 3: c_brenneri-Cbre_Contig60_+_/627772-630087 60 bp
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12 Sequence 4: c_elegans-II_+_/9706834-9708803 60 bp
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13 Sequence 5: c_briggsae-chrIfooI_+_/43862-46313 60 bp
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14 Sequence 6: c_remanei-Crem_Contig172foo_-_/123228-124941 60 bp
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15 Sequence 7: c_brenneri-Cbre_Contig60gak_+_/627772-630087 60 bp
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16 Sequence 8: c_elegans-II_+_more/9706834-9708803 60 bp
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17 Sequence 9: c_briggsae-chrII_+_bar/43862-46313 60 bp
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18 Sequence 10: c_remanei-Crem_Contig172zot_-_/123228-124941 60 bp
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19 Sequence 11: c_brenneri-Cbre_Contig60fee_+_/627772-630087 60 bp
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20 Sequence 12: c_elegans-II_+_meh/9706834-9708803 60 bp
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21 Start of Pairwise alignments
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22 Aligning...
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23
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24 Sequences (1:2) Aligned. Score: 80
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25 Sequences (1:3) Aligned. Score: 88
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26 Sequences (1:4) Aligned. Score: 83
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27 Sequences (1:5) Aligned. Score: 21
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28 Sequences (1:6) Aligned. Score: 20
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29 Sequences (1:7) Aligned. Score: 23
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30 Sequences (1:8) Aligned. Score: 18
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31 Sequences (1:9) Aligned. Score: 21
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32 Sequences (1:10) Aligned. Score: 16
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33 Sequences (1:11) Aligned. Score: 25
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34 Sequences (1:12) Aligned. Score: 10
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35 Sequences (2:3) Aligned. Score: 85
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36 Sequences (2:4) Aligned. Score: 86
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37 Sequences (2:5) Aligned. Score: 21
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38 Sequences (2:6) Aligned. Score: 20
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39 Sequences (2:7) Aligned. Score: 25
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40 Sequences (2:8) Aligned. Score: 20
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41 Sequences (2:9) Aligned. Score: 36
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42 Sequences (2:10) Aligned. Score: 16
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43 Sequences (2:11) Aligned. Score: 22
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44 Sequences (2:12) Aligned. Score: 17
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45 Sequences (3:4) Aligned. Score: 85
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46 Sequences (3:5) Aligned. Score: 13
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47 Sequences (3:6) Aligned. Score: 20
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48 Sequences (3:7) Aligned. Score: 25
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49 Sequences (3:8) Aligned. Score: 20
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50 Sequences (3:9) Aligned. Score: 36
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51 Sequences (3:10) Aligned. Score: 16
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52 Sequences (3:11) Aligned. Score: 18
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53 Sequences (3:12) Aligned. Score: 25
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54 Sequences (4:5) Aligned. Score: 13
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55 Sequences (4:6) Aligned. Score: 11
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56 Sequences (4:7) Aligned. Score: 20
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57 Sequences (4:8) Aligned. Score: 10
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58 Sequences (4:9) Aligned. Score: 31
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59 Sequences (4:10) Aligned. Score: 17
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60 Sequences (4:11) Aligned. Score: 29
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61 Sequences (4:12) Aligned. Score: 14
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62 Sequences (5:6) Aligned. Score: 73
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63 Sequences (5:7) Aligned. Score: 83
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64 Sequences (5:8) Aligned. Score: 80
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65 Sequences (5:9) Aligned. Score: 31
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66 Sequences (5:10) Aligned. Score: 14
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67 Sequences (5:11) Aligned. Score: 14
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68 Sequences (5:12) Aligned. Score: 12
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69 Sequences (6:7) Aligned. Score: 80
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70 Sequences (6:8) Aligned. Score: 88
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71 Sequences (6:9) Aligned. Score: 26
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72 Sequences (6:10) Aligned. Score: 16
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73 Sequences (6:11) Aligned. Score: 25
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74 Sequences (6:12) Aligned. Score: 12
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75 Sequences (7:8) Aligned. Score: 78
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76 Sequences (7:9) Aligned. Score: 31
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77 Sequences (7:10) Aligned. Score: 10
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78 Sequences (7:11) Aligned. Score: 12
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79 Sequences (7:12) Aligned. Score: 12
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80 Sequences (8:9) Aligned. Score: 31
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81 Sequences (8:10) Aligned. Score: 10
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82 Sequences (8:11) Aligned. Score: 14
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83 Sequences (8:12) Aligned. Score: 12
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84 Sequences (9:10) Aligned. Score: 63
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85 Sequences (9:11) Aligned. Score: 84
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86 Sequences (9:12) Aligned. Score: 78
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87 Sequences (10:11) Aligned. Score: 64
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88 Sequences (10:12) Aligned. Score: 76
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89 Sequences (11:12) Aligned. Score: 46
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90 Guide tree file created: [infile_copy.dnd]
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91
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92 There are 11 groups
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93 Start of Multiple Alignment
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94
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95 Aligning...
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96 Group 1: Sequences: 2 Score:1045
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97 Group 2: Sequences: 2 Score:1016
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98 Group 3: Sequences: 4 Score:1001
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99 Group 4: Sequences: 2 Score:313
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100 Group 5: Sequences: 2 Score:731
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101 Group 6: Sequences: 4 Score:516
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102 Group 7: Sequences: 8 Score:344
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103 Group 8: Sequences: 2 Score:1016
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104 Group 9: Sequences: 2 Score:1054
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105 Group 10: Sequences: 4 Score:945
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106 Group 11: Sequences: 12 Score:380
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107 Alignment Score 6283
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108
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109 CLUSTAL-Alignment file created [/share/shared/galaxy/database/files/002/dataset_2801.dat]
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110
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111
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112 Clustal created the following dnd file for your information:
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113 (
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114 (
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115 c_briggsae-chrII_+_/43862-46313:0.07349,
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116 c_brenneri-Cbre_Contig60_+_/627772-630087:0.04317)
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117 :0.02387,
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118 (
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119 c_remanei-Crem_Contig172_-_/123228-124941:0.06114,
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120 c_elegans-II_+_/9706834-9708803:0.07219)
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121 :0.01779,
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122 (
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123 (
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124 (
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125 c_briggsae-chrIfooI_+_/43862-46313:0.10368,
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126 c_brenneri-Cbre_Contig60gak_+_/627772-630087:0.06298)
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127 :0.01654,
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128 (
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129 c_remanei-Crem_Contig172foo_-_/123228-124941:0.05765,
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130 c_elegans-II_+_more/9706834-9708803:0.05902)
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131 :0.06262)
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132 :0.31533,
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133 (
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134 (
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135 c_briggsae-chrII_+_bar/43862-46313:0.02327,
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136 c_brenneri-Cbre_Contig60fee_+_/627772-630087:0.13463)
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137 :0.05016,
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138 (
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139 c_remanei-Crem_Contig172zot_-_/123228-124941:0.11667,
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140 c_elegans-II_+_meh/9706834-9708803:0.11737)
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141 :0.12013)
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142 :0.20951)
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143 :0.30133);
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144
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