comparison cd_hit_dup.xml @ 1:c8b83c5494db draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/cd_hit_dup commit de7140295cce07e1bc1697e51dab4271c8d7a8a6

0:c45a263664fd

        <![CDATA[
**What it does**

cd-hit-dup is a simple tool for removing duplicates from sequencing reads, with optional step to detect and remove chimeric reads. 

**Options**

cd-hit-dup provides a number of options to tune how the duplicates are removed::

 -d     Description length (default 0, truncate at the first whitespace character)

        its parents (default 30, minimum 20)
 -a     Abundance cutoff (default 1 without chimeric filtering, 2 with chimeric filtering)
 -b     Abundance ratio between a parent read and a chimeric read (default 1)
 -p     Dissimilarity control for chimeric filtering (default 1)


        ]]>
    </help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/bts565</citation>
    </citations>

1:c8b83c5494db

        <![CDATA[
**What it does**

cd-hit-dup is a simple tool for removing duplicates from sequencing reads, with optional step to detect and remove chimeric reads. 

.. class:: infomark

**TIP:** Chimeric filtering is only available on single-ended, or joined paired-end, reads.

**Options**

cd-hit-dup provides a number of options to tune how the duplicates are removed::

 -d     Description length (default 0, truncate at the first whitespace character)

        its parents (default 30, minimum 20)
 -a     Abundance cutoff (default 1 without chimeric filtering, 2 with chimeric filtering)
 -b     Abundance ratio between a parent read and a chimeric read (default 1)
 -p     Dissimilarity control for chimeric filtering (default 1)

        ]]>
    </help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/bts565</citation>
    </citations>