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diff bwa.xml @ 16:47c6967dc4e0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 8f4d108191d52e3b60212dfcc3f57541e5f849d0
author iuc
date Fri, 19 Aug 2022 18:51:11 +0000
parents 22b497739c9c
children
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--- a/bwa.xml	Tue Aug 31 07:48:28 2021 +0000
+++ b/bwa.xml	Fri Aug 19 18:51:11 2022 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="bwa" name="Map with BWA" version="@VERSION@.4">
+<tool id="bwa" name="Map with BWA" version="@VERSION@.5">
     <description>- map short reads (&lt; 100 bp) against reference genome</description>
     <xrefs>
         <xref type="bio.tools">bwa</xref>
@@ -129,6 +129,7 @@
         -o ${$input_type.adv_pe_options.o}
         -n ${$input_type.adv_pe_options.n}
         -N ${$input_type.adv_pe_options.N}
+        -c ${$input_type.adv_pe_options.c}
     #end if
     @read_group_options@
     #if str( $input_type.input_type_selector ) == "paired_collection":