# HG changeset patch
# User devteam
# Date 1483954245 18000
# Node ID 55dcd6aad1ab6c255ad74c8d14c83835413e3c20
# Parent  ed052d843da745bd847c2388124087af80263d46
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2 commit b22fc2e7243522b264f3d5d00706df8d18366405

diff -r ed052d843da7 -r 55dcd6aad1ab bowtie2_wrapper.xml
--- a/bowtie2_wrapper.xml	Sun Jan 08 07:58:14 2017 -0500
+++ b/bowtie2_wrapper.xml	Mon Jan 09 04:30:45 2017 -0500
@@ -16,7 +16,7 @@
             ln -s -f '$reference_genome.own_file' genome.fa &&
             #set index_path = 'genome'
         #else:
-            #set index_path = '$reference_genome.index.fields.path'
+            #set index_path = $reference_genome.index.fields.path
         #end if
 
         ## execute bowtie2
diff -r ed052d843da7 -r 55dcd6aad1ab tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Jan 08 07:58:14 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="bowtie2" version="2.2.6">
-      <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="samtools" version="1.2">
-      <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>