Mercurial > repos > devteam > bowtie2
comparison bowtie2_wrapper.xml @ 8:aef49b7f08b2 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2 commit 637e614b544bf3cd75306f27bcfe537cacae4a58
| author | devteam |
|---|---|
| date | Mon, 16 Nov 2015 14:37:53 -0500 |
| parents | 76231961d33b |
| children | fed480fea9f0 |
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| 7:51851252d90f | 8:aef49b7f08b2 |
|---|---|
| 1 <tool id="bowtie2" name="Bowtie2" version="0.6"> | 1 <tool id="bowtie2" name="Bowtie2" version="2.2.6"> |
| 2 <!-- Wrapper compatible with Bowtie version 2.2.4 --> | |
| 3 <description>- map reads against reference genome</description> | 2 <description>- map reads against reference genome</description> |
| 4 <macros> | 3 <macros> |
| 5 <import>read_group_macros.xml</import> | 4 <import>read_group_macros.xml</import> |
| 6 </macros> | 5 </macros> |
| 7 <version_command>bowtie2 --version</version_command> | 6 <version_command>bowtie2 --version</version_command> |
| 8 <requirements> | 7 <requirements> |
| 9 <requirement type="package" version="2.2.4">bowtie2</requirement> | 8 <requirement type="package" version="2.2.6">bowtie2</requirement> |
| 10 <requirement type="package" version="0.1.18">samtools</requirement> | 9 <requirement type="package" version="1.2">samtools</requirement> |
| 11 </requirements> | 10 </requirements> |
| 12 <command> | 11 <command> |
| 13 | 12 |
| 14 ## prepare bowtie2 index | 13 ## prepare bowtie2 index |
| 15 #set index_path = '' | 14 #set index_path = '' |