Mercurial > repos > devteam > blast_datatypes
comparison README.rst @ 11:236046d1d441 draft
Uploaded v0.0.19a, README tweaks
| author | peterjc |
|---|---|
| date | Wed, 26 Nov 2014 06:54:23 -0500 |
| parents | 939a600f45e9 |
| children | da92fef90117 |
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| 10:939a600f45e9 | 11:236046d1d441 |
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| 1 Galaxy datatypes for NCBI BLAST+ suite | 1 Galaxy datatypes for NCBI BLAST+ suite |
| 2 ====================================== | 2 ====================================== |
| 3 | 3 |
| 4 These Galaxy datatypes are copyright 2010-2013 by Peter Cock, The James Hutton | 4 These Galaxy datatypes are copyright 2010-2014 by Peter Cock (The James Hutton |
| 5 Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. | 5 Institute, UK) and additional contributors including Edward Kirton, Nicola |
| 6 Contributions/revisions copyright 2012 Edward Kirton. All rights reserved. | 6 Soranzo, and Bjoern Gruening. |
| 7 Contributions/revisions copyright 2013 Nicola Soranzo. All rights reserved. | |
| 8 | 7 |
| 9 See the licence text below. | 8 See the licence text below. |
| 10 | 9 |
| 11 Note that these files (and the associated BLAST+ wrappers) were originally | 10 Note that these files (and the associated BLAST+ wrappers) were originally |
| 12 distributed as part of the main Galaxy repository, but as of August 2012 moved | 11 distributed as part of the main Galaxy repository, but as of August 2012 moved |
| 27 ======= ====================================================================== | 26 ======= ====================================================================== |
| 28 Version Changes | 27 Version Changes |
| 29 ------- ---------------------------------------------------------------------- | 28 ------- ---------------------------------------------------------------------- |
| 30 v0.0.11 - Final revision as part of the Galaxy main repository, and the | 29 v0.0.11 - Final revision as part of the Galaxy main repository, and the |
| 31 first release via the Tool Shed | 30 first release via the Tool Shed |
| 32 v0.0.13 - Uses blast.py instead of xml.py to define the datatypes | 31 v0.0.13 - Uses ``blast.py`` instead of ``xml.py`` to define the datatypes |
| 33 v0.0.14 - Includes datatypes for protein and nucleotide BLAST databases | 32 v0.0.14 - Includes datatypes for protein and nucleotide BLAST databases |
| 34 (``blastdbp`` and ``blastdbn``, based on work by Edward Kirton) | 33 (``blastdbp`` and ``blastdbn``, based on work by Edward Kirton) |
| 35 v0.0.15 - Fixes a MetadataElement bug and includes more of the optional | 34 v0.0.15 - Fixes a MetadataElement bug and includes more of the optional |
| 36 BLAST database files (contribution from Nicola Soranzo) | 35 BLAST database files (contribution from Nicola Soranzo) |
| 37 v0.0.16 - Adopt standard MIT License. | 36 v0.0.16 - Adopt standard MIT License. |
| 38 - Use reStructuredText for this README file. | 37 - Use reStructuredText for this README file. |
| 39 - Development moved to GitHub, https://github.com/peterjc/galaxy_blast | 38 - Development moved to GitHub, https://github.com/peterjc/galaxy_blast |
| 40 - Nucleotide database definition aware of MegaBLAST index superheader | 39 - Nucleotide database definition aware of MegaBLAST index superheader |
| 41 v0.0.17 - Add ``maskinfo-asn1`` and ``maskinfo-asn1-binary`` sub-datatypes | 40 v0.0.17 - Add ``maskinfo-asn1`` and ``maskinfo-asn1-binary`` sub-datatypes |
| 41 (contribution from Nicola Soranzo) | |
| 42 v0.0.18 - Add retries to BLAST XML merge code. | 42 v0.0.18 - Add retries to BLAST XML merge code. |
| 43 - Modify display_data method to allow unit tests to function. | 43 - Modify display_data method to allow unit tests to function. |
| 44 v0.0.19 - Add ``blastdbp`` datatype for BLAST protein domain databases, for use | 44 v0.0.19 - Add ``blastdbp`` datatype for BLAST protein domain databases, for use |
| 45 with makeprofiledb and rpsblast (contribution from Bjoern Gruening). | 45 with makeprofiledb and rpsblast (contribution from Bjoern Gruening). |
| 46 - Add ``pssm-asn1`` datatype for Position Specific Scoring Matrices | 46 - Add ``pssm-asn1`` datatype for Position Specific Scoring Matrices |