comparison operation_filter.py @ 5:37652c34b3bf draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/basecoverage commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689

4:346e0034714a

# runs after the job (and after the default post-filter)
from galaxy.tools.parameters import DataToolParameter

from galaxy.jobs.handler import JOB_ERROR

# Older py compatibility
try:
    set()
except:

def validate_input( trans, error_map, param_values, page_param_map ):
    dbkeys = set()
    data_param_names = set()
    data_params = 0
    for name, param in page_param_map.iteritems():
        if isinstance( param, DataToolParameter ):
            # for each dataset parameter
            if param_values.get(name, None) is not None:
                dbkeys.add( param_values[name].dbkey )
                data_params += 1

    """Verify the output data after each run"""
    for data in out_data.values():
        try:
            if stderr and len( stderr ) > 0:
                raise Exception( stderr )

        except Exception:
            data.blurb = JOB_ERROR
            data.state = JOB_ERROR

5:37652c34b3bf

# runs after the job (and after the default post-filter)
from galaxy.jobs.handler import JOB_ERROR
from galaxy.tools.parameters import DataToolParameter

# Older py compatibility
try:
    set()
except:

def validate_input( trans, error_map, param_values, page_param_map ):
    dbkeys = set()
    data_param_names = set()
    data_params = 0
    for name, param in page_param_map.items():
        if isinstance( param, DataToolParameter ):
            # for each dataset parameter
            if param_values.get(name, None) is not None:
                dbkeys.add( param_values[name].dbkey )
                data_params += 1

    """Verify the output data after each run"""
    for data in out_data.values():
        try:
            if stderr and len( stderr ) > 0:
                raise Exception( stderr )
        except Exception:
            data.blurb = JOB_ERROR
            data.state = JOB_ERROR