Mercurial > repos > devteam > bamtools_filter

diff bamtools-filter.xml @ 14:ab0a7a622ff6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/bamtools/bamtools_filter commit c72d58cbe6a99bc8f9fde26fdde45b0c222890df
author iuc
date Fri, 20 Jul 2018 04:14:25 -0400
parents 9d8b309a7265
children
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--- a/bamtools-filter.xml	Tue Jun 05 14:22:26 2018 -0400
+++ b/bamtools-filter.xml	Fri Jul 20 04:14:25 2018 -0400
@@ -9,6 +9,7 @@
             cp '$script_file' '$out_file2' &&
             ln -s '${input_bam}' localbam.bam &&
             ln -s '${input_bam.metadata.bam_index}' localbam.bam.bai &&
+            cat '$script_file' &&
             bamtools filter -script '$script_file' -in localbam.bam -out '$out_file1'
         ]]>
     </command>