# HG changeset patch
# User devteam
# Date 1396464124 14400
# Node ID e531148fb5851814426520d11d068dbce90f7d4b
# Parent  332a7de8f98a164c106d861f598b9695e017b4ed
Uploaded tool definition that correctly references JAVA_JAR_PATH.

diff -r 332a7de8f98a -r e531148fb585 analyze_covariates.xml
--- a/analyze_covariates.xml	Tue Apr 01 09:11:43 2014 -0400
+++ b/analyze_covariates.xml	Wed Apr 02 14:42:04 2014 -0400
@@ -11,7 +11,7 @@
    --stdout "${output_log}"
    --html_report_from_directory "${output_html}" "${output_html.files_path}"
    -p 'java 
-    -jar "${JAVA_JAR_PATH}/AnalyzeCovariates.jar"
+    -jar "\$JAVA_JAR_PATH/AnalyzeCovariates.jar"
     -recalFile "${input_recal}"
     -outputDir "${output_html.files_path}"
     ##--num_threads 4 ##hard coded, for now