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annotate fixedValueColumn.xml @ 0:787fa5c2c738 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 11:15:22 -0500
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787fa5c2c738 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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1 <tool id="addValue" name="Add column" version="1.0.0">
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2 <description>to an existing dataset</description>
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3 <command interpreter="perl">fixedValueColumn.pl "${input}" "${out_file1}" "${exp}" "${iterate}"</command>
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4 <inputs>
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5 <param name="exp" type="text" value="1" label="Add this value"/>
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6 <param format="tabular" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" />
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7 <param name="iterate" type="select" label="Iterate?">
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8 <option value="no">NO</option>
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9 <option value="yes">YES</option>
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10 </param>
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11 </inputs>
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12 <outputs>
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13 <data format="input" name="out_file1" metadata_source="input"/>
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14 </outputs>
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15 <tests>
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16 <test>
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17 <param name="exp" value="1"/>
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18 <param name="input" value="1.bed"/>
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19 <param name="iterate" value="no"/>
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20 <output name="out_file1" file="eq-addvalue.dat"/>
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21 </test>
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22 </tests>
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23 <help>
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25 .. class:: infomark
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787fa5c2c738 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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27 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
787fa5c2c738 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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29 -----
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787fa5c2c738 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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31 **What it does**
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32
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33 You can enter any value and it will be added as a new column to your dataset
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34
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35 -----
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37 **Example**
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38
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39 If you original data looks like this::
787fa5c2c738 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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40
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41 chr1 10 100 geneA
787fa5c2c738 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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42 chr2 200 300 geneB
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43 chr2 400 500 geneC
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44
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45 Typing **+** in the text box will generate::
787fa5c2c738 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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46
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47 chr1 10 100 geneA +
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48 chr2 200 300 geneB +
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49 chr2 400 500 geneC +
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50
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52 You can also add line numbers by selecting **Iterate: YES**. In this case if you enter **1** in the text box you will get::
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53
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54 chr1 10 100 geneA 1
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55 chr2 200 300 geneB 2
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56 chr2 400 500 geneC 3
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60 </help>
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61 </tool>