Mercurial > repos > dereeper > uniqprimer
diff uniqprimer.xml @ 1:2321523366d7 draft
Uploaded
| author | dereeper |
|---|---|
| date | Fri, 08 Jun 2018 05:43:42 -0400 |
| parents | cdd8f911ad91 |
| children | 05ae1ce478bc |
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--- a/uniqprimer.xml Fri Oct 07 04:18:11 2016 -0400 +++ b/uniqprimer.xml Fri Jun 08 05:43:42 2018 -0400 @@ -1,11 +1,11 @@ <tool id="uniqprimer" name="Uniqprimer" version="0.5.0"> <description>Design specific primers of sequences</description> <requirements> - <requirement type="package" version="5.0.0">emboss</requirement> + <requirement type="package" version="6.5.7">emboss</requirement> <requirement type="package" version="3.23">mummer</requirement> + <requirement type="package" version="1.1.4">primer3</requirement> </requirements> - - <command>$__tool_directory__/uniqprimer.sh $include $exclude $product_size_range $primer_size $min_size $max_size $crossvalidate $outfile $log $fasta + <command>source $__tool_directory__/include.txt; $__tool_directory__/uniqprimer.sh $include $exclude $product_size_range $primer_size $min_size $max_size $crossvalidate $outfile $log $fasta #for $i in $inputs -i ${i.input} #end for @@ -22,8 +22,8 @@ <param type="text" name="min_size" label="Min primer size" value="18"/> <param type="text" name="max_size" label="Max primer size" value="27"/> <param name="crossvalidate" type="select" label="Cross validate primers against exclude files for extra certainty"> + <option value="Yes">Yes</option> <option value="No">No</option> - <option value="Yes">Yes</option> </param> </inputs> <outputs>