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changeset 10:a1375fb40c03 draft

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Uploaded
author dcorreia
date Wed, 19 Oct 2016 09:06:49 -0400
parents b89b7278dff5
children b0d5f7b87402
files phyml.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/phyml.xml	Mon Jul 04 10:33:59 2016 -0400
+++ b/phyml.xml	Wed Oct 19 09:06:49 2016 -0400
@@ -14,9 +14,9 @@
 
     <command><![CDATA[
           ##PhyML outputs are based on input path and we need to create outputs in working_dir.
-          ln -sf $input input_tmp;
+          ln -sf $input '${input.name}';
          
-          phyml --input input_tmp
+          phyml --input '${input.name}'
                 ${phylip_format}
                 --datatype ${seq.type_of_seq}
                 --multiple ${nb_data_set}