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1
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1
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2 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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3 --- PhyML 20130805 ---
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4 http://www.atgc-montpellier.fr/phyml
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5 Copyright CNRS - Universite Montpellier II
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6 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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7
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8 . Sequence filename: phylip
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9 . Data set: #1
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10 . Tree topology search : NNIs
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11 . Initial tree: BioNJ
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7
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12 . Model of nucleotides substitution: HKY85
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1
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13 . Number of taxa: 7
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7
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14 . Log-likelihood: -3113.71269
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1
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15 . Unconstrained likelihood: -3015.37711
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16 . Parsimony: 177
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7
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17 . Tree size: 0.12463
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1
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18 . Discrete gamma model: Yes
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19 - Number of categories: 4
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7
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20 - Gamma shape parameter: 0.773
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21 . Transition/transversion ratio: 2.937
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22 . Nucleotides frequencies:
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23 - f(A)= 0.28368
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24 - f(C)= 0.21846
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25 - f(G)= 0.26233
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26 - f(T)= 0.23552
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1
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27
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28 . Run ID: none
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29 . Random seed: 1458308600
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30 . Subtree patterns aliasing: no
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31 . Version: 20130805
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7
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32 . Time used: 0h0m0s (0 seconds)
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1
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33
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34 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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35 Suggested citations:
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36 S. Guindon, JF. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, O. Gascuel
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37 "New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0."
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38 Systematic Biology. 2010. 59(3):307-321.
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39
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40 S. Guindon & O. Gascuel
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41 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
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42 Systematic Biology. 2003. 52(5):696-704.
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43 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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