Mercurial > repos > deepakjadmin > toolpadel3
changeset 0:2928e8312b5f draft
Uploaded
| author | deepakjadmin |
|---|---|
| date | Thu, 14 Jan 2016 07:35:42 -0500 |
| parents | |
| children | e71e35e34dac |
| files | removeduplecate.R removeduplecate.xml tool_dependencies.xml |
| diffstat | 3 files changed, 38 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/removeduplecate.R Thu Jan 14 07:35:42 2016 -0500 @@ -0,0 +1,11 @@ +args <- commandArgs(TRUE) + + +res1 <- read.csv(args[1]) +#res11 <- duplicated(res1[,1:length(res1) - 1]) +res11 <- duplicated(res1[,1]) +result <- res1[!res11,] +names1 <- result[,1] +rownames(result) <- names1 +result$Name <- NULL +write.csv(result,file=args[2])
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/removeduplecate.xml Thu Jan 14 07:35:42 2016 -0500 @@ -0,0 +1,19 @@ +<tool id="aaapadel003" name="Remove redundancy"> +<description>"Removes Repeated Entry From File"</description> +<requirements> + <requirement type="set_environment">PADEL_TOOL3_PATH</requirement> + + +</requirements> + +<command interpreter="Rscript">removeduplecate.R $Input1 $Non_redudant_mega_file</command> +<inputs> +<param format="txt" name="Input1" type="data" label="Merged Descriptor File" help="csv format"/> +</inputs> +<outputs> +<data format="csv" name="Non_redudant_mega_file" label="Non-redundant Mega Descriptor File"/> +</outputs> +<help> +run command with Descriptor file and in csv format only .output file will be in CSV format. +</help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Jan 14 07:35:42 2016 -0500 @@ -0,0 +1,8 @@ +<?xml version="1.0"?> +<tool_dependency> + +<set_environment version="1.0"> + <environment_variable name="PADEL_TOOL3_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> + </set_environment> + +</tool_dependency>