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author deepakjadmin
date Thu, 24 Sep 2015 03:03:08 -0400
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<tool id="djvytfdgkdls" name="R 3.2.0 test" version="1.0.0">
  <description>R version and installation test</description>
<requirements>
     <requirement type="set_environment">R_ROOT_DIR</requirement>
    <requirement type="package" version="3.2.0">R</requirement>
    <requirement type="package" version="3.24.12">limma</requirement>
</requirements>
  <command>   	 GALAXY_ROOT_DIR=`pwd`; 
  		 echo \$GALAXY_ROOT_DIR &gt; $log 2 &gt;&amp;1;
                 cd ../../../../;
                 GALAXY_ROOT_DIR=`pwd`;
                 echo \$GALAXY_ROOT_DIR &gt; $log 2 &gt;&amp;1;
                 \$R_ROOT_DIR/bin/Rscript \${GALAXY_ROOT_DIR}/tools/toop2/test.R $output  &gt; $log 2 &gt;&amp;1
   </command>
  <outputs>
    <data type="data" name="output" label ="outputfile" />
    <data type="text" name="log" label ="packages loaded" />
  </outputs>
  <help>
 
  </help>
</tool>