Mercurial > repos > deepakjadmin > rcpp_edger_limma_test2

diff rtest.xml @ 0:7171114c3734 draft

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author deepakjadmin
date Wed, 23 Sep 2015 14:24:35 -0400
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children 5e3fd49af978
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rtest.xml	Wed Sep 23 14:24:35 2015 -0400
@@ -0,0 +1,20 @@
+<tool id="djvfdgkdls" name="R 3.2.0 test" version="1.0.0">
+  <description>R version and installation test</description>
+<requirements>
+     <requirement type="set_environment">R_ROOT_DIR</requirement>
+    <requirement type="package" version="3.2.0">R</requirement>
+    <requirement type="package" version="3.24.12">limma</requirement>
+</requirements>
+  <command>   	 GALAXY_ROOT_DIR=`pwd`; 
+                 cd ../../../../;
+                 GALAXY_ROOT_DIR=`pwd`;
+                 \$R_ROOT_DIR/bin/Rscript \${GALAXY_ROOT_DIR}/tools/toop2/test.R $output;
+   </command>
+  <outputs>
+    <data type="data" name="output" label ="outputfile" />
+  </outputs>
+  <help>
+ 
+  </help>
+</tool>
+